Mercurial > repos > mvdbeek > bam_readtagger
comparison findcluster.xml @ 75:2c7f70390b7c draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ee42193ec9c4778fd2bd312f53322389b0731c5"
author | mvdbeek |
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date | Mon, 23 Mar 2020 10:24:02 -0400 |
parents | 6c15dd4415ea |
children | 8c3d8d38674a |
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74:6c15dd4415ea | 75:2c7f70390b7c |
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1 <tool id="findcluster" name="Find clusters of reads" version="0.5.21"> | 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.22"> |
2 <description>in bam files</description> | 2 <description>in bam files</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <requirements> | 6 <requirements> |
7 <requirement type="package" version="0.5.21">readtagger</requirement> | 7 <requirement type="package" version="0.5.22">readtagger</requirement> |
8 </requirements> | 8 </requirements> |
9 <version_command>findcluster --version</version_command> | 9 <version_command>findcluster --version</version_command> |
10 <command detect_errors="aggressive"><![CDATA[ | 10 <command detect_errors="aggressive"><![CDATA[ |
11 #import re | 11 #import re |
12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) | 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) |