comparison macros.xml @ 31:301316cb596a draft

planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty

30:db5c766503dd

        <option value="V">V</option>
        <option value="W">W</option>
        <option value="X">X</option>
        <option value="Y">Y</option>
    </xml>
</macros>

31:301316cb596a

        <option value="V">V</option>
        <option value="W">W</option>
        <option value="X">X</option>
        <option value="Y">Y</option>
    </xml>
    <xml name="reference_source_conditional" token_reference_type="reference_type">
        <conditional name="@REFERENCE_TYPE@_source">
            <param name="reference_source_selector" type="select" label="Will you select a @REFERENCE_TYPE@ reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options. See `Indexes` section of help below">
                <option value="cached">Use a built-in @REFERENCE_TYPE@ genome index</option>
                <option value="history">Use a genome from history and build index</option>
            </param>
            <when value="cached">
                <param name="ref_file" type="select" label="Using @REFERENCE_TYPE@ reference genome" help="Select @REFERENCE_TYPE@ genome from the list" optional="True">
                    <options from_data_table="bwa_mem_indexes">
                        <filter type="sort_by" column="2" />
                        <validator type="no_options" message="No indexes are available" />
                    </options>
                    <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
                </param>
            </when>
            <when value="history">
                <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the reference sequence" help="You can upload a FASTA sequence to the history and use it as reference" optional="True"/>
            </when>
        </conditional>
    </xml>
</macros>