Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 57:38ae00c376ef draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8186814619b9163944e3c11cb797f02c94804ecb
author mvdbeek
date Mon, 29 Jul 2019 10:52:49 -0400
parents b50e114fece9
children 84f51c5d69e3
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56:b50e114fece9 57:38ae00c376ef
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.3"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.4">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.3">readtagger</requirement> 4 <requirement type="package" version="0.5.4">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output' reference.fa 9 extract_variants '$input' '$output' reference.fa