Mercurial > repos > mvdbeek > bam_readtagger
comparison findcluster.xml @ 44:4870f1d6f037 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit ae40519a953219ec4cc8ef4d586fc06cad88fb01
| author | mvdbeek |
|---|---|
| date | Mon, 14 Jan 2019 13:18:25 -0500 |
| parents | 6f9b1b81b593 |
| children | d475729e90ea |
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| 43:6f9b1b81b593 | 44:4870f1d6f037 |
|---|---|
| 1 <tool id="findcluster" name="Find clusters of reads" version="0.4.12"> | 1 <tool id="findcluster" name="Find clusters of reads" version="0.4.13"> |
| 2 <description>in bam files</description> | 2 <description>in bam files</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="0.4.12">readtagger</requirement> | 7 <requirement type="package" version="0.4.13">readtagger</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <version_command>findcluster --version</version_command> | 9 <version_command>findcluster --version</version_command> |
| 10 <command detect_errors="aggressive"><![CDATA[ | 10 <command detect_errors="aggressive"><![CDATA[ |
| 11 #import re | 11 #import re |
| 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) | 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) |