Mercurial > repos > mvdbeek > bam_readtagger
comparison findcluster.xml @ 53:5eb0ec276ea5 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0ab8f542e4cc37bf6123e755627821e1fead989e
| author | mvdbeek |
|---|---|
| date | Thu, 13 Jun 2019 12:52:17 -0400 |
| parents | b03c6d8c37c1 |
| children | 7191da0bc7be |
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| 52:b03c6d8c37c1 | 53:5eb0ec276ea5 |
|---|---|
| 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.0"> | 1 <tool id="findcluster" name="Find clusters of reads" version="0.5.1"> |
| 2 <description>in bam files</description> | 2 <description>in bam files</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="0.5.0">readtagger</requirement> | 7 <requirement type="package" version="0.5.1">readtagger</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <version_command>findcluster --version</version_command> | 9 <version_command>findcluster --version</version_command> |
| 10 <command detect_errors="aggressive"><![CDATA[ | 10 <command detect_errors="aggressive"><![CDATA[ |
| 11 #import re | 11 #import re |
| 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) | 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) |