Mercurial > repos > mvdbeek > bam_readtagger
comparison bam_readtagger.xml @ 50:6c6a6a828c4f draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit faaf13601245173e1a8647ff9599a74b2f092401-dirty
| author | mvdbeek |
|---|---|
| date | Thu, 14 Feb 2019 12:13:57 -0500 |
| parents | f4344d943248 |
| children | 08656cd6c989 |
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| 49:f4344d943248 | 50:6c6a6a828c4f |
|---|---|
| 21 $discard_proper_pairs | 21 $discard_proper_pairs |
| 22 --cores "\${GALAXY_SLOTS:-2}" | 22 --cores "\${GALAXY_SLOTS:-2}" |
| 23 -o '$tagged_file' | 23 -o '$tagged_file' |
| 24 ]]></command> | 24 ]]></command> |
| 25 <inputs> | 25 <inputs> |
| 26 <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_input_sorted.bam"/> | 26 <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_sorted.bam"/> |
| 27 <repeat name="alignment_series" title="Alignments"> | 27 <repeat name="alignment_series" title="Alignments"> |
| 28 <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_input_sorted.bam"/> | 28 <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_sorted.bam"/> |
| 29 <param type="select" name="r_tag" label="First letter to use for read tag" value="A"> | 29 <param type="select" name="r_tag" label="First letter to use for read tag" value="A"> |
| 30 <expand macro="tag_options"/> | 30 <expand macro="tag_options"/> |
| 31 </param> | 31 </param> |
| 32 <param type="select" name="m_tag" label="First letter to use for mate tag" value="B"> | 32 <param type="select" name="m_tag" label="First letter to use for mate tag" value="B"> |
| 33 <expand macro="tag_options"/> | 33 <expand macro="tag_options"/> |