Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 72:8ef26717ba8b draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 76af27eb69faaeffe6a9f20a40e112b42b5aed53"
author mvdbeek
date Sat, 11 Jan 2020 11:58:25 -0500
parents b090e190c813
children 676b7ff2d899
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71:b090e190c813 72:8ef26717ba8b
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.18"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.19">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.18">readtagger</requirement> 4 <requirement type="package" version="0.5.19">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output_alignment' reference.fa && 9 extract_variants '$input' '$output_alignment' reference.fa &&