Mercurial > repos > mvdbeek > bam_readtagger
comparison test.sh @ 0:a38447a59412 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d63500891dc173a7657bb9a9aabbeb6cf2ddb9e3-dirty
| author | mvdbeek |
|---|---|
| date | Fri, 17 Feb 2017 10:54:47 -0500 |
| parents | |
| children |
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| -1:000000000000 | 0:a38447a59412 |
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| 1 #!/usr/bin/env bash | |
| 2 | |
| 3 set -e | |
| 4 | |
| 5 if grep -v 'python tag_reads.py' bam_tag_reads.xml | |
| 6 then | |
| 7 sed -i.bak 's/tag_reads -t/python \$__tool_directory__\/tag_reads.py -t/g' bam_tag_reads.xml | |
| 8 fi | |
| 9 cp ../tag_reads/tag_reads.py . | |
| 10 planemo test --conda_prefix ~/miniconda3 |