Mercurial > repos > mvdbeek > bam_readtagger
comparison bam_readtagger.xml @ 52:b03c6d8c37c1 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 45d0337e2a0d35e9a83d9c87c005c876c45ee054
author | mvdbeek |
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date | Wed, 12 Jun 2019 14:23:52 -0400 |
parents | 08656cd6c989 |
children | 5eb0ec276ea5 |
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51:08656cd6c989 | 52:b03c6d8c37c1 |
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1 <tool id="bam_readtagger" name="Tag alignment files" version="0.4.19"> | 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.5.0"> |
2 <description>from multiple bam files</description> | 2 <description>from multiple bam files</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <requirements> | 6 <requirements> |
7 <requirement type="package" version="0.4.19">readtagger</requirement> | 7 <requirement type="package" version="0.5.0">readtagger</requirement> |
8 </requirements> | 8 </requirements> |
9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
10 readtagger -t '$tag_file' -s | 10 readtagger -t '$tag_file' -s |
11 #for $element in $alignment_series | 11 #for $element in $alignment_series |
12 '$element.annotate_with':$element.r_tag:$element.m_tag | 12 '$element.annotate_with':$element.r_tag:$element.m_tag |