Mercurial > repos > mvdbeek > bam_readtagger
comparison bam_readtagger.xml @ 56:b50e114fece9 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c3a7b2f6aa429ea2881ee8d111ace3cce95bb9e7
| author | mvdbeek |
|---|---|
| date | Sun, 28 Jul 2019 15:59:14 -0400 |
| parents | 7191da0bc7be |
| children | 38ae00c376ef |
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| 55:5c96f12f837d | 56:b50e114fece9 |
|---|---|
| 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.5.2"> | 1 <tool id="bam_readtagger" name="Tag alignment files" version="0.5.3"> |
| 2 <description>from multiple bam files</description> | 2 <description>from multiple bam files</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package" version="0.5.2">readtagger</requirement> | 7 <requirement type="package" version="0.5.3">readtagger</requirement> |
| 8 </requirements> | 8 </requirements> |
| 9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 readtagger -t '$tag_file' -s | 10 readtagger -t '$tag_file' -s |
| 11 #for $element in $alignment_series | 11 #for $element in $alignment_series |
| 12 '$element.annotate_with':$element.r_tag:$element.m_tag | 12 '$element.annotate_with':$element.r_tag:$element.m_tag |