Mercurial > repos > mvdbeek > bam_readtagger
comparison extract_variants.xml @ 56:b50e114fece9 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c3a7b2f6aa429ea2881ee8d111ace3cce95bb9e7
author | mvdbeek |
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date | Sun, 28 Jul 2019 15:59:14 -0400 |
parents | 5c96f12f837d |
children | 38ae00c376ef |
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55:5c96f12f837d | 56:b50e114fece9 |
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1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.2"> | 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.3"> |
2 <description>from long reads</description> | 2 <description>from long reads</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.5.2">readtagger</requirement> | 4 <requirement type="package" version="0.5.3">readtagger</requirement> |
5 </requirements> | 5 </requirements> |
6 <version_command>extract_variants --version</version_command> | 6 <version_command>extract_variants --version</version_command> |
7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
8 ln -fs '$insert_reference.fields.path' reference.fa && | 8 ln -fs '$insert_reference.fields.path' reference.fa && |
9 extract_variants '$input' '$output' reference.fa | 9 extract_variants '$input' '$output' reference.fa |