Mercurial > repos > mvdbeek > bam_readtagger
comparison extract_variants.xml @ 63:e675e6d349bd draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8ed4215b007a3f552e1b1964907a505858822fb4"
author | mvdbeek |
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date | Sun, 01 Sep 2019 12:03:42 -0400 |
parents | 16eba798cbc6 |
children | 190d64e5e32b |
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62:16eba798cbc6 | 63:e675e6d349bd |
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1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.9"> | 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.10"> |
2 <description>from long reads</description> | 2 <description>from long reads</description> |
3 <requirements> | 3 <requirements> |
4 <requirement type="package" version="0.5.9">readtagger</requirement> | 4 <requirement type="package" version="0.5.10">readtagger</requirement> |
5 </requirements> | 5 </requirements> |
6 <version_command>extract_variants --version</version_command> | 6 <version_command>extract_variants --version</version_command> |
7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
8 ln -fs '$insert_reference.fields.path' reference.fa && | 8 ln -fs '$insert_reference.fields.path' reference.fa && |
9 extract_variants '$input' '$output' reference.fa | 9 extract_variants '$input' '$output' reference.fa |