Mercurial > repos > mvdbeek > bam_readtagger
comparison plot_coverage.xml @ 38:f6311a04a6c9 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6ac744bd9d610990d1d54a2c36ddfca671b15205-dirty
| author | mvdbeek |
|---|---|
| date | Thu, 15 Mar 2018 05:13:22 -0400 |
| parents | 93f7962a3e19 |
| children | 4b1ebfcd0f46 |
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| 37:93f7962a3e19 | 38:f6311a04a6c9 |
|---|---|
| 1 <tool id="plot_coverage" name="Plot coverage" version="0.4.6"> | 1 <tool id="plot_coverage" name="Plot coverage" version="0.4.9"> |
| 2 <description>as area plot between BAM files</description> | 2 <description>as area plot between BAM files</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="0.4.6">readtagger</requirement> | 4 <requirement type="package" version="0.4.9">readtagger</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <command detect_errors="aggressive"><![CDATA[ | 6 <command detect_errors="aggressive"><![CDATA[ |
| 7 #import re | 7 #import re |
| 8 #set identifier1 = re.sub('[^\w\-_\.\,]', '_', str( $input1.element_identifier)) | 8 #set identifier1 = re.sub('[^\w\-_\.\,]', '_', str( $input1.element_identifier)) |
| 9 #set identifier2 = re.sub('[^\w\-_\.\,]', '_', str( $input2.element_identifier)) | 9 #set identifier2 = re.sub('[^\w\-_\.\,]', '_', str( $input2.element_identifier)) |
| 15 <param name="regions" type="text" label="Select regions to plot" optional="true" help="e.g X:1200000-1250000,X1250000-1300000. If left blank will plot all contigs/chromosomes."> | 15 <param name="regions" type="text" label="Select regions to plot" optional="true" help="e.g X:1200000-1250000,X1250000-1300000. If left blank will plot all contigs/chromosomes."> |
| 16 <sanitizer> | 16 <sanitizer> |
| 17 <valid initial="string.letters,string.digits"> | 17 <valid initial="string.letters,string.digits"> |
| 18 <add value="-" /> | 18 <add value="-" /> |
| 19 <add value="," /> | 19 <add value="," /> |
| 20 <add value=":" /> | |
| 20 </valid> | 21 </valid> |
| 21 </sanitizer> | 22 </sanitizer> |
| 22 </param> | 23 </param> |
| 23 </inputs> | 24 </inputs> |
| 24 <outputs> | 25 <outputs> |