diff filter_insertions.xml @ 64:190d64e5e32b draft

"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit be63fdf98ea1aaa5009136c6b0f8c1311e53bb8e"

--- a/filter_insertions.xml	Sun Sep 01 12:03:42 2019 -0400
+++ b/filter_insertions.xml	Sun Sep 01 16:30:54 2019 -0400
@@ -1,7 +1,7 @@
-<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.10">
+<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.11">
     <description>based on softclips in control files</description>
     <requirements>
-        <requirement type="package" version="0.5.10">readtagger</requirement>
+        <requirement type="package" version="0.5.11">readtagger</requirement>
     </requirements>
     <version_command>confirm_insertions --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
@@ -18,12 +18,14 @@
         #end for
         --output_path '$output'
         $output_discard
+        --min_length $min_length
     ]]></command>
     <inputs>
         <param name="putative_insertions" label="Select dataset with filtered putative insertions" argument="--putative_insertions_path" type="data" format="gff3"/>
         <param name="all_insertions" label="Select datasets with all unfiltered insertions" argument="--all_treatments_path" type="data" format="gff3"/>
         <param name="all_controls" label="Select datasets with all unfiltered insertions from one or more control samples" argument="--all_controls_path" multiple="True" type="data" format="gff3"/>
         <param name="output_discard" label="Output discarded records? Discarded records will be marked as failed." truevalue="--output_discarded_records" falsevalue="--no_output_discarded_records" checked="True" type="boolean"/>
+        <param argument="--min_length" label="Minimum length necessary to match clip patterns" help="If too low will create false matches, if too high will not find legitimate matches." value="4" min="1" type="integer"/>
     </inputs>
     <outputs>
         <data name="output" format="gff3"/>