Mercurial > repos > mvdbeek > bam_readtagger
diff filter_insertions.xml @ 64:190d64e5e32b draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit be63fdf98ea1aaa5009136c6b0f8c1311e53bb8e"
author | mvdbeek |
---|---|
date | Sun, 01 Sep 2019 16:30:54 -0400 |
parents | e675e6d349bd |
children | da97e0316abc |
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--- a/filter_insertions.xml Sun Sep 01 12:03:42 2019 -0400 +++ b/filter_insertions.xml Sun Sep 01 16:30:54 2019 -0400 @@ -1,7 +1,7 @@ -<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.10"> +<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.11"> <description>based on softclips in control files</description> <requirements> - <requirement type="package" version="0.5.10">readtagger</requirement> + <requirement type="package" version="0.5.11">readtagger</requirement> </requirements> <version_command>confirm_insertions --version</version_command> <command detect_errors="aggressive"><![CDATA[ @@ -18,12 +18,14 @@ #end for --output_path '$output' $output_discard + --min_length $min_length ]]></command> <inputs> <param name="putative_insertions" label="Select dataset with filtered putative insertions" argument="--putative_insertions_path" type="data" format="gff3"/> <param name="all_insertions" label="Select datasets with all unfiltered insertions" argument="--all_treatments_path" type="data" format="gff3"/> <param name="all_controls" label="Select datasets with all unfiltered insertions from one or more control samples" argument="--all_controls_path" multiple="True" type="data" format="gff3"/> <param name="output_discard" label="Output discarded records? Discarded records will be marked as failed." truevalue="--output_discarded_records" falsevalue="--no_output_discarded_records" checked="True" type="boolean"/> + <param argument="--min_length" label="Minimum length necessary to match clip patterns" help="If too low will create false matches, if too high will not find legitimate matches." value="4" min="1" type="integer"/> </inputs> <outputs> <data name="output" format="gff3"/>