Mercurial > repos > mvdbeek > bam_readtagger
diff filter_insertions.xml @ 41:4fdf606153df draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 89e57ebe9ad1eb4ba44167f83935869fb54b8396-dirty
author | mvdbeek |
---|---|
date | Thu, 24 May 2018 11:05:38 -0400 |
parents | 4b1ebfcd0f46 |
children | 5b8781514bc1 |
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--- a/filter_insertions.xml Sun Apr 01 03:53:15 2018 -0400 +++ b/filter_insertions.xml Thu May 24 11:05:38 2018 -0400 @@ -1,7 +1,7 @@ -<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.4.10"> +<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.4.11"> <description>based on softclips in control files</description> <requirements> - <requirement type="package" version="0.4.10">readtagger</requirement> + <requirement type="package" version="0.4.11">readtagger</requirement> </requirements> <version_command>confirm_insertions --version</version_command> <command detect_errors="aggressive"><![CDATA[ @@ -11,14 +11,16 @@ confirm_insertions --putative_insertions_path putative_insertions.gff --all_treatments_path all_insertions.gff - --all_controls_path all_controls_path.gff + #for p in $all_controls + --all_controls_paths '$p' + #end for --output_path '$output' $output_discard ]]></command> <inputs> <param name="putative_insertions" label="Path to filtered putative insertinos" argument="--putative_insertions_path" type="data" format="gff3"/> <param name="all_insertions" label="Path to all unfiltered insertions" argument="--all_treatments_path" type="data" format="gff3"/> - <param name="all_controls" label="Path to all unfiltered insertions from control sample" argument="--all_controls_path" type="data" format="gff3"/> + <param name="all_controls" label="Path to all unfiltered insertions from one or more control samples" argument="--all_controls_path" multiple="True" type="data" format="gff3"/> <param name="output_discard" label="Output discarded records? Discarded records will be marked as failed." truevalue="--output_discarded_records" falsevalue="--no_output_discarded_records" checked="True" type="boolean"/> </inputs> <outputs>