Mercurial > repos > mvdbeek > bam_readtagger

diff bam_readtagger.xml @ 47:a4e30210fc3d draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit ff53a7c7582a4dfda1bfcc0c8832b4edc223bc5e
author mvdbeek
date Mon, 28 Jan 2019 03:26:58 -0500
parents 4ebfef7b3488
children 72c9afb724a6
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--- a/bam_readtagger.xml	Tue Jan 15 14:03:29 2019 -0500
+++ b/bam_readtagger.xml	Mon Jan 28 03:26:58 2019 -0500
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.4.15">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.4.16">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.4.15">readtagger</requirement>
+        <requirement type="package" version="0.4.16">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -s
@@ -23,9 +23,9 @@
         -o '$tagged_file'
     ]]></command>
     <inputs>
-        <param name="tag_file" argument="--tag_file" type="data" format="bam"/>
+        <param name="tag_file" argument="--tag_file" type="data" format="bam,qname_input_sorted.bam"/>
         <repeat name="alignment_series" title="Alignments">
-            <param name="annotate_with" argument="--annotate_with" type="data" format="bam"/>
+            <param name="annotate_with" argument="--annotate_with" type="data" format="bam,qname_input_sorted.bam"/>
             <param type="select" name="r_tag" label="First letter to use for read tag" value="A">
                 <expand macro="tag_options"/>
             </param>