Mercurial > repos > mvdbeek > bam_readtagger
diff filter_insertions.xml @ 52:b03c6d8c37c1 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 45d0337e2a0d35e9a83d9c87c005c876c45ee054
author | mvdbeek |
---|---|
date | Wed, 12 Jun 2019 14:23:52 -0400 |
parents | 08656cd6c989 |
children | 5eb0ec276ea5 |
line wrap: on
line diff
--- a/filter_insertions.xml Fri Feb 15 02:31:18 2019 -0500 +++ b/filter_insertions.xml Wed Jun 12 14:23:52 2019 -0400 @@ -1,7 +1,7 @@ -<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.4.19"> +<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.5.0"> <description>based on softclips in control files</description> <requirements> - <requirement type="package" version="0.4.19">readtagger</requirement> + <requirement type="package" version="0.5.0">readtagger</requirement> </requirements> <version_command>confirm_insertions --version</version_command> <command detect_errors="aggressive"><![CDATA[ @@ -20,9 +20,9 @@ $output_discard ]]></command> <inputs> - <param name="putative_insertions" label="Path to filtered putative insertinos" argument="--putative_insertions_path" type="data" format="gff3"/> - <param name="all_insertions" label="Path to all unfiltered insertions" argument="--all_treatments_path" type="data" format="gff3"/> - <param name="all_controls" label="Path to all unfiltered insertions from one or more control samples" argument="--all_controls_path" multiple="True" type="data" format="gff3"/> + <param name="putative_insertions" label="Select dataset with filtered putative insertions" argument="--putative_insertions_path" type="data" format="gff3"/> + <param name="all_insertions" label="Select datasets with all unfiltered insertions" argument="--all_treatments_path" type="data" format="gff3"/> + <param name="all_controls" label="Select datasets with all unfiltered insertions from one or more control samples" argument="--all_controls_path" multiple="True" type="data" format="gff3"/> <param name="output_discard" label="Output discarded records? Discarded records will be marked as failed." truevalue="--output_discarded_records" falsevalue="--no_output_discarded_records" checked="True" type="boolean"/> </inputs> <outputs>