Mercurial > repos > mvdbeek > damidseq_findpeaks
comparison damidseq_findpeaks.xml @ 4:5a56b400df93 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
author | mvdbeek |
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date | Fri, 20 Apr 2018 05:07:19 -0400 |
parents | 61d383c9047a |
children | 29f82a5c7966 |
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3:61d383c9047a | 4:5a56b400df93 |
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11 --min_count=$min_count | 11 --min_count=$min_count |
12 --min_quant=$min_quant | 12 --min_quant=$min_quant |
13 --n=$n | 13 --n=$n |
14 --step=$step | 14 --step=$step |
15 --unified_peaks=$unified_peaks | 15 --unified_peaks=$unified_peaks |
16 '$input_file' | LC_ALL=C sed -e 's/[^A-Za-z0-9._-]/ /g' && | 16 '$input_file' | LC_ALL=C sed -e 's/[^A-Za-z0-9._-]/ /g' 2>&1 > log.txt&& |
17 mv peak_analysis*/*.gff peaks.gff && | 17 mv peak_analysis*/*.gff peaks.gff && |
18 mv peak_analysis*/*data log.txt | 18 cat peak_analysis*/*data >> log.txt |
19 ]]></command> | 19 ]]></command> |
20 <inputs> | 20 <inputs> |
21 <param name="input_file" type="data" format="gff,bed,bedgraph" label="Select dam-fusion/dam ratio files" help="You can use damidseq_core to produce this file."/> | 21 <param name="input_file" type="data" format="gff,bed,bedgraph" label="Select dam-fusion/dam ratio files" help="You can use damidseq_core to produce this file."/> |
22 <param argument="--fdr" type="float" min="0" max="1" value="0.01" label="Set the False Discovery Rate (FDR)"/> | 22 <param argument="--fdr" type="float" min="0" max="1" value="0.01" label="Set the False Discovery Rate (FDR)"/> |
23 <param argument="--frac" type="float" min="0" max="1" value="0.01" label="Number of random fragments to consider per iteration"/> | 23 <param argument="--frac" type="float" min="0" max="1" value="0.01" label="Number of random fragments to consider per iteration"/> |