Mercurial > repos > mvdbeek > damidseq_findpeaks

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
author mvdbeek
date Fri, 20 Apr 2018 05:32:08 -0400
parents 29f82a5c7966
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Simple FDR random permutation peak caller
Usage: [options] [files in bedgraph or GFF format]
	
Options:
 --fdr            False discovery rate value
                    [Current value: 0.01]
 --frac           Number of random fragments to consider per iteration
 --min_count      Minimum number of fragments to consider as a peak
                    [Current value: 2]
 --min_quant      Minimum quantile for considering peaks
                    [Current value: 0.95]
 --n              Number of iterations
                    [Current value: 100]
 --step           Stepping for quantiles
                    [Current value: 0.01]
 --unified_peaks  Method for calling peak overlaps (two options):
                    'min': call minimum overlapping peak area
                    'max': call maximum overlap as peak
                    [Current value: max]