# HG changeset patch
# User mvdbeek
# Date 1524215239 14400
# Node ID 5a56b400df935134a2273302aae35eaf51e73278
# Parent  61d383c9047a9192cd4f62e4ff450a1496ce16de
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty

diff -r 61d383c9047a -r 5a56b400df93 damidseq_findpeaks.xml
--- a/damidseq_findpeaks.xml	Fri Apr 20 05:03:34 2018 -0400
+++ b/damidseq_findpeaks.xml	Fri Apr 20 05:07:19 2018 -0400
@@ -13,9 +13,9 @@
  --n=$n
  --step=$step
  --unified_peaks=$unified_peaks
- '$input_file' | LC_ALL=C sed -e 's/[^A-Za-z0-9._-]/ /g' && 
+ '$input_file' | LC_ALL=C sed -e 's/[^A-Za-z0-9._-]/ /g' 2>&1 > log.txt&& 
 mv peak_analysis*/*.gff peaks.gff &&
-mv peak_analysis*/*data log.txt
+cat peak_analysis*/*data >> log.txt
     ]]></command>
     <inputs>
         <param name="input_file" type="data" format="gff,bed,bedgraph" label="Select dam-fusion/dam ratio files" help="You can use damidseq_core to produce this file."/>