Mercurial > repos > mvdbeek > damidseq_polii_gene_call
comparison damid_polII_gene_call.xml @ 1:83ca801f21f9 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_polII_gene_call commit 98722d2ca8205595f032361072aaab450e5f4f83
| author | mvdbeek |
|---|---|
| date | Fri, 04 Jan 2019 14:43:20 -0500 |
| parents | 1b5bd3b955ed |
| children |
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| 0:1b5bd3b955ed | 1:83ca801f21f9 |
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| 1 <tool id="damidseq_polII_gene_call" name="Calculate polII occupancy" version="1.0.2"> | 1 <tool id="damidseq_polII_gene_call" name="Calculate polII occupancy" version="1.0.2"> |
| 2 <description>from DamIDseq data</description> | 2 <description>from DamIDseq data</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.4">R</requirement> | 4 <requirement type="package" version="3.5">r-base</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <version_command><![CDATA[Rscript '$__tool_directory__/polii.gene.call' | grep -o "v.*"]]></version_command> | 6 <version_command><![CDATA[Rscript '$__tool_directory__/polii.gene.call' | grep -o "v.*"]]></version_command> |
| 7 <command detect_errors="aggressive"><![CDATA[ | 7 <command detect_errors="aggressive"><![CDATA[ |
| 8 ln -fs '$genes' genes.gff && | 8 ln -fs '$genes' genes.gff && |
| 9 ln -fs '$input_file' input.$input_file.ext && | 9 ln -fs '$input_file' input.$input_file.ext && |