comparison dockerfiles/scriptrunner/Dockerfile @ 2:495946ffc2d6 draft default tip

planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit dded837d19aeb3f06b84e5076282cedeeaf713fa

1:315a7e9ed6eb

ENV CONDA_PREFIX="/home/galaxy/conda" \
    PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH"

RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 
RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \
    conda config --add channels r && \
    conda config --add channels bioconda && \
    conda config --add channels iuc && \
    . activate default && \
    conda install ghostscript coreutils"
USER root

2:495946ffc2d6

ENV CONDA_PREFIX="/home/galaxy/conda" \
    PATH="/home/galaxy/conda/envs/default/bin:/home/galaxy/conda/bin:$PATH"

RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 
RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
RUN bash -c "conda create -y -q -c bioconda --name default samtools bcftools && \
    conda config --add channels conda-forge && \
    conda config --add channels bioconda && \
    conda config --add channels iuc && \
    . activate default && \
    conda install ghostscript coreutils"
USER root