Mercurial > repos > mvdbeek > docker_scriptrunner
diff dockerfiles/r-bioperl-python/Dockerfile @ 0:21d312776891 draft
planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit 30f8264cdd67d40dec8acde6407f32152e6a29c1-dirty
| author | mvdbeek |
|---|---|
| date | Sat, 09 Jul 2016 16:57:13 -0400 |
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| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/dockerfiles/r-bioperl-python/Dockerfile Sat Jul 09 16:57:13 2016 -0400 @@ -0,0 +1,13 @@ +# Script runner base image +# +# VERSION 0.3 +# This Dockerfile is the base system for executing scripts with the docker scriptrunner. + +FROM artbio/scriptrunner + +MAINTAINER Marius van den Beek, m.vandenbeek@gmail.com + +USER root +RUN su - galaxy -c 'bash -c ". /home/galaxy/conda/bin/activate default && \ + conda install -y ncurses biopython perl-bioperl bedtools bioconductor-deseq2 bioconductor-edger numpy scipy r-reshape"' && \ + chown -R galaxy:users /home/galaxy && chmod g=rwx /home/galaxy