Mercurial > repos > mvdbeek > docker_scriptrunner

diff dockerfiles/scriptrunner/Dockerfile @ 2:495946ffc2d6 draft default tip

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planemo upload for repository https://github.com/mvdbeek/docker_scriptrunner/ commit dded837d19aeb3f06b84e5076282cedeeaf713fa
author mvdbeek
date Sun, 22 Jul 2018 13:38:01 -0400
parents 21d312776891
children
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--- a/dockerfiles/scriptrunner/Dockerfile	Sat Jul 09 17:00:06 2016 -0400
+++ b/dockerfiles/scriptrunner/Dockerfile	Sun Jul 22 13:38:01 2018 -0400
@@ -26,8 +26,8 @@
 
 RUN curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -L -o miniconda.sh 
 RUN bash miniconda.sh -b -p "$CONDA_PREFIX" && rm miniconda.sh
-RUN bash -c "conda create -y -q -c bioconda --name default samtools==0.1.19 bcftools && \
-    conda config --add channels r && \
+RUN bash -c "conda create -y -q -c bioconda --name default samtools bcftools && \
+    conda config --add channels conda-forge && \
     conda config --add channels bioconda && \
     conda config --add channels iuc && \
     . activate default && \