Mercurial > repos > mvdbeek > package_ncbi_vdb_2_5_2
comparison tool_dependencies.xml @ 0:1d307129f4f2 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author | mvdbeek |
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date | Wed, 04 Nov 2015 06:15:41 -0500 |
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-1:000000000000 | 0:1d307129f4f2 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="ngs_sdk" version="1.1.3"> | |
4 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="ncbi_vdb" version="2.5.2"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action> | |
10 <action type="set_environment_for_install"> | |
11 <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
12 <package name="perl" version="5.18.1" /> | |
13 </repository> | |
14 <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu"> | |
15 <package name="ngs_sdk" version="1.1.3" /> | |
16 </repository> | |
17 </action> | |
18 <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action> | |
19 <action type="move_directory_files"> | |
20 <source_directory>.</source_directory> | |
21 <destination_directory>$INSTALL_DIR/</destination_directory> | |
22 </action> | |
23 <action type="set_environment"> | |
24 <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable> | |
25 </action> | |
26 </actions> | |
27 </install> | |
28 <readme> | |
29 ncbi-vdb, required for sra-tools package. | |
30 </readme> | |
31 </package> | |
32 </tool_dependency> |