Mercurial > repos > mvdbeek > package_ncbi_vdb_2_5_2

changeset 0:1d307129f4f2 draft default tip

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_ged_velvet commit 70fadb7e8972b1db550d0e067584930ce1ec8673-dirty
author mvdbeek
date Wed, 04 Nov 2015 06:15:41 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 32 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Nov 04 06:15:41 2015 -0500
@@ -0,0 +1,32 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="ngs_sdk" version="1.1.3">
+        <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="ncbi_vdb" version="2.5.2">
+        <install version="1.0">
+            <actions>
+                <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="8b3509930a44" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="perl" version="5.18.1" />
+                    </repository>
+                    <repository changeset_revision="2cc3f1941cb5" name="package_ngs_sdk_1_1_3" owner="mvdbeek" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="ngs_sdk" version="1.1.3" />
+                    </repository>
+                </action>
+                <action type="autoconf">--with-ngs-sdk-prefix=$NGS_SDK_DIR --prefix=$INSTALL_DIR --build=$INSTALL_DIR</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            ncbi-vdb, required for sra-tools package.
+        </readme>
+    </package>
+</tool_dependency>