# HG changeset patch
# User mvdbeek
# Date 1456250125 18000
# Node ID 388c91fb949bed72ec22c1c1708d9a72fc37abac

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/packages/package_r_3_2_1_goseq_1_22_0 commit a01781fce7ed5fcdd11062d2fe68ab17bdb176fc

diff -r 000000000000 -r 388c91fb949b tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Feb 23 12:55:25 2016 -0500
@@ -0,0 +1,42 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.2.1">
+        <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libxml2" version="2.9.1">
+        <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="goseq" version="1.22.0">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.2.1" />
+                    </repository>
+                    <!-- libxml2 needs to be sourced after R because R also was compiled against a different version of libxml2 -->
+                    <repository changeset_revision="45b16a3ab504" name="package_libxml2_2_9_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="libxml2" version="2.9.1" />
+                    </repository>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiasedUrn_1.07.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/BiocGenerics_0.16.1.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/S4Vectors_0.8.11.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/IRanges_2.4.7.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GenomeInfoDb_1.6.3.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/Biobase_2.30.0.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/DBI_0.3.1.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/RSQLite_1.0.0.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/AnnotationDbi_1.32.3.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/geneLenDataBase_1.6.0.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/GO.db_3.2.2.tar.gz?raw=true</package>
+                        <package>https://github.com/mvdbeek/galaxy_package_sources/blob/master/package_r_3_2_1_goseq/goseq_1.22.0.tar.gz?raw=true</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            goseq Gene Ontology analyser
+            -----
+            Does selection-unbiased testing for category enrichment amongst differentially expressed (DE) genes for RNA-seq data.
+            By default, tests gene ontology (GO) categories, but any categories may be tested.
+        </readme>
+    </package>
+</tool_dependency>