Mercurial > repos > mvdbeek > printenv

annotate README.txt @ 0:96a23b8fc63a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
author mvdbeek
date Sat, 13 Feb 2016 06:53:44 -0500
parents
children a24160ffd329
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
1 This tool clips adapter sequences from a fastq file and outputs either a
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
2 fasta or fastq file of clipped reads with renumbered fasta/fastq headers.
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
3
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
4 Clipped sequences with Ns can be discarded.
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
5
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
6 Min size and max size filter clipped reads on their size.
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
7
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
8 Note that unclipped reads that satisfy the min and max size conditions are kept.
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
9
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
10 Homepage: drosophile.org
96a23b8fc63a planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/printenv commit 1136a0c5b7398eddc5420113784914c0d471bfbf-dirty
mvdbeek
parents:
diff changeset
11 Repositoy development: https://bitbucket.org/drosofff/gedtools/