Mercurial > repos > mvdbeek > r_goseq_1_22_0
annotate tool-data/gene_ids.loc.sample @ 13:ea84562a5115 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
| author | mvdbeek |
|---|---|
| date | Thu, 25 Feb 2016 07:15:06 -0500 |
| parents | fe71b97cc1a5 |
| children |
| rev | line source |
|---|---|
|
0
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
1 knownGene knownGene, UCSC Genes, NA, Entrez Gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
2 knownGeneOld3 knownGeneOld3, Old UCSC Genes, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
3 ccdsGene ccdsGene, CCDS, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
4 refGene refGene, RefSeq Genes, NA, Entrez Gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
5 xenoRefGene xenoRefGene, Other RefSeq, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
6 vegaGene vegaGene, Vega Genes, Vega Protein Genes, HAVANA Pseudogene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
7 vegaPseudoGene vegaPseudoGene, Vega Genes, Vega Pseudogenes, HAVANA Pseudogene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
8 ensGene ensGene, Ensembl Genes, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
9 acembly acembly, AceView Genes, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
10 sibGene sibGene, SIB Genes, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
11 nscanPasaGene nscanPasaGene, N-SCAN, N-SCAN PASA-EST, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
12 nscanGene nscanGene, N-SCAN, N-SCAN, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
13 sgpGene sgpGene, SGP Genes, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
14 geneid geneid, Geneid Genes, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
15 genscan genscan, Genscan Genes, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
16 exoniphy exoniphy, Exoniphy, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
17 augustusHints augustusHints, Augustus, Augustus Hints, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
18 augustusXRA augustusXRA, Augustus, Augustus De Novo, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
19 augustusAbinitio augustusAbinitio, Augustus, Augustus Ab Initio, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
20 acescan acescan, ACEScan, NA, |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
21 lincRNAsTranscripts lincRNAsTranscripts, lincRNAsTranscripts, NA, Name of gene |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
22 wgEncodeGencodeManualV3 wgEncodeGencodeManualV3, Gencode Genes, Gencode Manual, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
23 wgEncodeGencodeAutoV3 wgEncodeGencodeAutoV3, Gencode Genes, Gencode Auto, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
24 wgEncodeGencodePolyaV3 wgEncodeGencodePolyaV3, Gencode Genes, Gencode PolyA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
25 wgEncodeGencodeBasicV17 wgEncodeGencodeBasicV17, GENCODE Genes V17, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
26 wgEncodeGencodeCompV17 wgEncodeGencodeCompV17, GENCODE Genes V17, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
27 wgEncodeGencodePseudoGeneV17 wgEncodeGencodePseudoGeneV17, GENCODE Genes V17, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
28 wgEncodeGencode2wayConsPseudoV17 wgEncodeGencode2wayConsPseudoV17, GENCODE Genes V17, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
29 wgEncodeGencodePolyaV17 wgEncodeGencodePolyaV17, GENCODE Genes V17, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
30 wgEncodeGencodeBasicV14 wgEncodeGencodeBasicV14, GENCODE Genes V14, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
31 wgEncodeGencodeCompV14 wgEncodeGencodeCompV14, GENCODE Genes V14, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
32 wgEncodeGencodePseudoGeneV14 wgEncodeGencodePseudoGeneV14, GENCODE Genes V14, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
33 wgEncodeGencode2wayConsPseudoV14 wgEncodeGencode2wayConsPseudoV14, GENCODE Genes V14, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
34 wgEncodeGencodePolyaV14 wgEncodeGencodePolyaV14, GENCODE Genes V14, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
35 wgEncodeGencodeBasicV7 wgEncodeGencodeBasicV7, GENCODE Genes V7, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
36 wgEncodeGencodeCompV7 wgEncodeGencodeCompV7, GENCODE Genes V7, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
37 wgEncodeGencodePseudoGeneV7 wgEncodeGencodePseudoGeneV7, GENCODE Genes V7, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
38 wgEncodeGencode2wayConsPseudoV7 wgEncodeGencode2wayConsPseudoV7, GENCODE Genes V7, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
39 wgEncodeGencodePolyaV7 wgEncodeGencodePolyaV7, GENCODE Genes V7, NA, Ensembl gene ID |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
40 flyBaseGene flyBaseGene, FlyBase Genes, NA, Name of canonical transcript in cluster |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
41 sgdGene sgdGene, SGD Genes, NA, Name of canonical transcript in cluster |
|
fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
42 geneSymbol geneSymbol, refGene, refFlat, Gene Symbol |