Mercurial > repos > mvdbeek > r_goseq_1_22_0
annotate tool-data/gene_ids.loc.sample @ 0:fe71b97cc1a5 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
| author | mvdbeek |
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| date | Wed, 24 Feb 2016 15:54:37 -0500 |
| parents | |
| children |
| rev | line source |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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1 knownGene knownGene, UCSC Genes, NA, Entrez Gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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2 knownGeneOld3 knownGeneOld3, Old UCSC Genes, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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3 ccdsGene ccdsGene, CCDS, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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4 refGene refGene, RefSeq Genes, NA, Entrez Gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
|
5 xenoRefGene xenoRefGene, Other RefSeq, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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6 vegaGene vegaGene, Vega Genes, Vega Protein Genes, HAVANA Pseudogene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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7 vegaPseudoGene vegaPseudoGene, Vega Genes, Vega Pseudogenes, HAVANA Pseudogene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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8 ensGene ensGene, Ensembl Genes, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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9 acembly acembly, AceView Genes, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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10 sibGene sibGene, SIB Genes, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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11 nscanPasaGene nscanPasaGene, N-SCAN, N-SCAN PASA-EST, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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12 nscanGene nscanGene, N-SCAN, N-SCAN, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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13 sgpGene sgpGene, SGP Genes, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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14 geneid geneid, Geneid Genes, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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15 genscan genscan, Genscan Genes, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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16 exoniphy exoniphy, Exoniphy, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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17 augustusHints augustusHints, Augustus, Augustus Hints, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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18 augustusXRA augustusXRA, Augustus, Augustus De Novo, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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19 augustusAbinitio augustusAbinitio, Augustus, Augustus Ab Initio, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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20 acescan acescan, ACEScan, NA, |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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21 lincRNAsTranscripts lincRNAsTranscripts, lincRNAsTranscripts, NA, Name of gene |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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22 wgEncodeGencodeManualV3 wgEncodeGencodeManualV3, Gencode Genes, Gencode Manual, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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23 wgEncodeGencodeAutoV3 wgEncodeGencodeAutoV3, Gencode Genes, Gencode Auto, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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24 wgEncodeGencodePolyaV3 wgEncodeGencodePolyaV3, Gencode Genes, Gencode PolyA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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25 wgEncodeGencodeBasicV17 wgEncodeGencodeBasicV17, GENCODE Genes V17, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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26 wgEncodeGencodeCompV17 wgEncodeGencodeCompV17, GENCODE Genes V17, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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27 wgEncodeGencodePseudoGeneV17 wgEncodeGencodePseudoGeneV17, GENCODE Genes V17, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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28 wgEncodeGencode2wayConsPseudoV17 wgEncodeGencode2wayConsPseudoV17, GENCODE Genes V17, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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29 wgEncodeGencodePolyaV17 wgEncodeGencodePolyaV17, GENCODE Genes V17, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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30 wgEncodeGencodeBasicV14 wgEncodeGencodeBasicV14, GENCODE Genes V14, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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31 wgEncodeGencodeCompV14 wgEncodeGencodeCompV14, GENCODE Genes V14, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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32 wgEncodeGencodePseudoGeneV14 wgEncodeGencodePseudoGeneV14, GENCODE Genes V14, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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33 wgEncodeGencode2wayConsPseudoV14 wgEncodeGencode2wayConsPseudoV14, GENCODE Genes V14, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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34 wgEncodeGencodePolyaV14 wgEncodeGencodePolyaV14, GENCODE Genes V14, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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35 wgEncodeGencodeBasicV7 wgEncodeGencodeBasicV7, GENCODE Genes V7, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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36 wgEncodeGencodeCompV7 wgEncodeGencodeCompV7, GENCODE Genes V7, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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37 wgEncodeGencodePseudoGeneV7 wgEncodeGencodePseudoGeneV7, GENCODE Genes V7, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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38 wgEncodeGencode2wayConsPseudoV7 wgEncodeGencode2wayConsPseudoV7, GENCODE Genes V7, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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39 wgEncodeGencodePolyaV7 wgEncodeGencodePolyaV7, GENCODE Genes V7, NA, Ensembl gene ID |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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40 flyBaseGene flyBaseGene, FlyBase Genes, NA, Name of canonical transcript in cluster |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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41 sgdGene sgdGene, SGD Genes, NA, Name of canonical transcript in cluster |
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fe71b97cc1a5
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff
changeset
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42 geneSymbol geneSymbol, refGene, refFlat, Gene Symbol |