annotate goseq.xml @ 19:9442d1bf6d93 draft default tip

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Fri, 26 Feb 2016 13:26:56 -0500
parents 5fb82111ec62
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
19
9442d1bf6d93 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 18
diff changeset
1 <tool id="goseq" name="goseq gene ontology analyser" version="0.1.5">
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
2 <description />
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
3 <requirements>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
4 <requirement type="package" version="3.2.1">R</requirement>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
5 <requirement type="package" version="1.22.0">goseq</requirement>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
6 </requirements>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
7 <command interpreter="Rscript">
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
8 goseq.r --dge_file "$dge_file"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
9 --p_adj_column "$p_adj_column"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
10 --cutoff "$p_adj_cutoff"
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
11 #if $source.use_length_file == "yes":
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
12 --length_file "$length_file"
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
13 #end if
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
14 --genome "$genome"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
15 --gene_id "$gene_id"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
16 --wallenius_tab "$wallenius_tab"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
17 --sampling_tab "$sampling_tab"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
18 --nobias_tab "$nobias_tab"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
19 --length_bias_plot "$length_bias_plot"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
20 --sample_vs_wallenius_plot "$sample_vs_wallenius_plot"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
21 --repcnt "$repcnt"
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
22 </command>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
23 <inputs>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
24 <param help="deseq2/edger/limma differential gene expression list" label="DGE list" name="dge_file" type="data" format="tabular" />
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
25 <param help="Select the column that contains the multiple-testing corrected p-value" label="p adjust column" name="p_adj_column" type="data_column" numeric="true" data_ref="dge_file"/>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
26 <param help="Typically 0.05 after multiple testing correction" max="1" label="Minimum p adjust value to consider genes as differentially expressed" name="p_adj_cutoff" type="float" value="0.05" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
27 <conditional name="source">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
28 <param help="This is needed if the gene length is not available in goseq. e.g. hg38 and mm10." label="Use gene length file?" name="use_length_file" type="select">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
29 <option value="no">no</option>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
30 <option value="yes">yes</option>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
31 </param>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
32 <when value="yes">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
33 <param label="Gene length file" name="length_file" type="data" format="tabular" required="false" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
34 </when>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
35 <when value="no">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
36 </when>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
37 </conditional>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
38 <param help="Needed to retrieve gene length for length correction" label="Select the genome source" name="genome" size="3" type="select">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
39 <options from_data_table="go_genomes"></options>
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
40 </param>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
41 <param help="Needed for GO analysis" label="Select gene identifier" name="gene_id" type="select">
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
42 <options from_data_table="go_gene_ids"></options>
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
43 </param>
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
44 <param help="Draw this many random control gene sets. Set to 0 to not do sampling. Larger values take a long time" label="sampling depth" name="repcnt" size="3" type="integer" min="0" max="10000" value="0" />
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
45 </inputs>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
46 <outputs>
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
47 <data format="pdf" label="length bias plot" name="length_bias_plot" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
48 <data format="pdf" label="Plot P-value from sampling against wallenius distribution" name="sample_vs_wallenius_plot">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
49 <filter>repcnt != 0</filter>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
50 </data>
18
5fb82111ec62 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 17
diff changeset
51 <data format="tabular" label="Ranked category list - no length bias correction" name="nobias_tab" />
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
52 <data format="tabular" label="Ranked category list - sampling" name="sampling_tab">
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
53 <filter>repcnt != 0</filter>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
54 </data>
18
5fb82111ec62 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 17
diff changeset
55 <data format="tabular" label="Ranked category list - wallenius approx. of p-values" name="wallenius_tab" />
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
56 </outputs>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
57 <tests>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
58 <test>
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
59 <param name="dge_file" value="dge_list.tab" ftype="tabular"/>
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
60 <param name="use_length_file" value="no" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
61 <param name="p_adj_column" value="2" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
62 <param name="genome" value="hg19" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
63 <param name="gene_id" value="ensGene" />
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
64 <output name="wallenius_tab" file="wall.tab" compare="contains"/>/>
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
65 </test>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
66 </tests>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
67 <help>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
68
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
69 **What it does**
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
70
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
71 Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data.
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
72
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
73 Options map closely to the excellent manual_
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
74
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
75 .. _manual: https://bioconductor.org/packages/release/bioc/vignettes/goseq/inst/doc/goseq.pdf
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
76
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
77
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
78 </help>
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
79 <citations>
17
1b03f6232900 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
mvdbeek
parents: 0
diff changeset
80 <citation type="doi">10.1186/gb-2010-11-2-r14</citation>
0
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
81 </citations>
fe71b97cc1a5 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit 85e0f34aec3045f48ca9b1a00db02de199a99c95-dirty
mvdbeek
parents:
diff changeset
82 </tool>