Mercurial > repos > mvdbeek > r_goseq_1_22_0
comparison get_length_and_gc_content.xml @ 8:f036e2d66c85 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
| author | mvdbeek |
|---|---|
| date | Thu, 25 Feb 2016 06:14:09 -0500 |
| parents | 15ce6435ab83 |
| children | d1eed994287a |
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| 7:15ce6435ab83 | 8:f036e2d66c85 |
|---|---|
| 8 get_length_and_gc_content.r --gtf "$gtf" | 8 get_length_and_gc_content.r --gtf "$gtf" |
| 9 #if $fastaSource.genomeSource == "indexed": | 9 #if $fastaSource.genomeSource == "indexed": |
| 10 --fasta "$fastaSource.fasta.fields.path" | 10 --fasta "$fastaSource.fasta.fields.path" |
| 11 #else: | 11 #else: |
| 12 --fasta "$fastaSource.fasta" | 12 --fasta "$fastaSource.fasta" |
| 13 #end if | |
| 13 --output "output" | 14 --output "output" |
| 14 </command> | 15 </command> |
| 15 <inputs> | 16 <inputs> |
| 16 <param help="The GTF must match the FASTA file" label="GTF file for length and GC calculation" name="gtf" type="data" /> | 17 <param help="The GTF must match the FASTA file" label="GTF file for length and GC calculation" name="gtf" type="data" /> |
| 17 <conditional name="fastaSource"> | 18 <conditional name="fastaSource"> |