Mercurial > repos > mvdbeek > r_goseq_1_22_0

diff get_length_and_gc_content.xml @ 7:15ce6435ab83 draft

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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Thu, 25 Feb 2016 06:09:34 -0500
parents a6198fc1116f
children f036e2d66c85
line wrap: on
line diff
--- a/get_length_and_gc_content.xml	Thu Feb 25 05:49:08 2016 -0500
+++ b/get_length_and_gc_content.xml	Thu Feb 25 06:09:34 2016 -0500
@@ -6,7 +6,10 @@
     </requirements>
     <command interpreter="Rscript">
         get_length_and_gc_content.r --gtf "$gtf"
-        --fasta "$fastaSource.fasta"
+        #if $fastaSource.genomeSource == "indexed":
+            --fasta "$fastaSource.fasta.fields.path"
+        #else:
+            --fasta "$fastaSource.fasta"
         --output "output"
     </command>
     <inputs>