Mercurial > repos > mvdbeek > r_goseq_1_22_0
diff test-data/gene_ids.loc @ 17:1b03f6232900 draft
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
| author | mvdbeek |
|---|---|
| date | Fri, 26 Feb 2016 08:49:59 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gene_ids.loc Fri Feb 26 08:49:59 2016 -0500 @@ -0,0 +1,42 @@ +knownGene knownGene, UCSC Genes, NA, Entrez Gene ID +knownGeneOld3 knownGeneOld3, Old UCSC Genes, NA, +ccdsGene ccdsGene, CCDS, NA, +refGene refGene, RefSeq Genes, NA, Entrez Gene ID +xenoRefGene xenoRefGene, Other RefSeq, NA, +vegaGene vegaGene, Vega Genes, Vega Protein Genes, HAVANA Pseudogene ID +vegaPseudoGene vegaPseudoGene, Vega Genes, Vega Pseudogenes, HAVANA Pseudogene ID +ensGene ensGene, Ensembl Genes, NA, Ensembl gene ID +acembly acembly, AceView Genes, NA, +sibGene sibGene, SIB Genes, NA, +nscanPasaGene nscanPasaGene, N-SCAN, N-SCAN PASA-EST, +nscanGene nscanGene, N-SCAN, N-SCAN, +sgpGene sgpGene, SGP Genes, NA, +geneid geneid, Geneid Genes, NA, +genscan genscan, Genscan Genes, NA, +exoniphy exoniphy, Exoniphy, NA, +augustusHints augustusHints, Augustus, Augustus Hints, +augustusXRA augustusXRA, Augustus, Augustus De Novo, +augustusAbinitio augustusAbinitio, Augustus, Augustus Ab Initio, +acescan acescan, ACEScan, NA, +lincRNAsTranscripts lincRNAsTranscripts, lincRNAsTranscripts, NA, Name of gene +wgEncodeGencodeManualV3 wgEncodeGencodeManualV3, Gencode Genes, Gencode Manual, Ensembl gene ID +wgEncodeGencodeAutoV3 wgEncodeGencodeAutoV3, Gencode Genes, Gencode Auto, Ensembl gene ID +wgEncodeGencodePolyaV3 wgEncodeGencodePolyaV3, Gencode Genes, Gencode PolyA, Ensembl gene ID +wgEncodeGencodeBasicV17 wgEncodeGencodeBasicV17, GENCODE Genes V17, NA, Ensembl gene ID +wgEncodeGencodeCompV17 wgEncodeGencodeCompV17, GENCODE Genes V17, NA, Ensembl gene ID +wgEncodeGencodePseudoGeneV17 wgEncodeGencodePseudoGeneV17, GENCODE Genes V17, NA, Ensembl gene ID +wgEncodeGencode2wayConsPseudoV17 wgEncodeGencode2wayConsPseudoV17, GENCODE Genes V17, NA, Ensembl gene ID +wgEncodeGencodePolyaV17 wgEncodeGencodePolyaV17, GENCODE Genes V17, NA, Ensembl gene ID +wgEncodeGencodeBasicV14 wgEncodeGencodeBasicV14, GENCODE Genes V14, NA, Ensembl gene ID +wgEncodeGencodeCompV14 wgEncodeGencodeCompV14, GENCODE Genes V14, NA, Ensembl gene ID +wgEncodeGencodePseudoGeneV14 wgEncodeGencodePseudoGeneV14, GENCODE Genes V14, NA, Ensembl gene ID +wgEncodeGencode2wayConsPseudoV14 wgEncodeGencode2wayConsPseudoV14, GENCODE Genes V14, NA, Ensembl gene ID +wgEncodeGencodePolyaV14 wgEncodeGencodePolyaV14, GENCODE Genes V14, NA, Ensembl gene ID +wgEncodeGencodeBasicV7 wgEncodeGencodeBasicV7, GENCODE Genes V7, NA, Ensembl gene ID +wgEncodeGencodeCompV7 wgEncodeGencodeCompV7, GENCODE Genes V7, NA, Ensembl gene ID +wgEncodeGencodePseudoGeneV7 wgEncodeGencodePseudoGeneV7, GENCODE Genes V7, NA, Ensembl gene ID +wgEncodeGencode2wayConsPseudoV7 wgEncodeGencode2wayConsPseudoV7, GENCODE Genes V7, NA, Ensembl gene ID +wgEncodeGencodePolyaV7 wgEncodeGencodePolyaV7, GENCODE Genes V7, NA, Ensembl gene ID +flyBaseGene flyBaseGene, FlyBase Genes, NA, Name of canonical transcript in cluster +sgdGene sgdGene, SGD Genes, NA, Name of canonical transcript in cluster +geneSymbol geneSymbol, refGene, refFlat, Gene Symbol