view tool-data/genomes.loc.sample @ 13:ea84562a5115 draft

planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/goseq_1_22_0 commit fdd0811efc61c31f88ff17096fbe8ee8cfacd766-dirty
author mvdbeek
date Thu, 25 Feb 2016 07:15:06 -0500
parents fe71b97cc1a5
children
line wrap: on
line source

hg38	hg38, Human, Dec. 2013, Genome Reference Consortium GRCh38
hg19	hg19, Human, Feb. 2009, Genome Reference Consortium GRCh37
hg18	hg18, Human, Mar. 2006, NCBI Build 36.1
hg17	hg17, Human, May 2004, NCBI Build 35
hg16	hg16, Human, Jul. 2003, NCBI Build 34
vicPac2	vicPac2, Alpaca, Mar. 2013, Broad Institute Vicugna_pacos-2.0.1
vicPac1	vicPac1, Alpaca, Jul. 2008, Broad Institute VicPac1.0
dasNov3	dasNov3, Armadillo, Dec. 2011, Broad Institute DasNov3
otoGar3	otoGar3, Bushbaby, Mar. 2011, Broad Institute OtoGar3
papHam1	papHam1, Baboon, Nov. 2008, Baylor College of Medicine HGSC Pham_1.0
papAnu2	papAnu2, Baboon, Mar. 2012, Baylor College of Medicine Panu_2.0
felCat8	felCat8, Cat, Nov. 2014, ICGSC Felis_catus_8.0
felCat5	felCat5, Cat, Sep. 2011, ICGSC Felis_catus-6.2
felCat4	felCat4, Cat, Dec. 2008, NHGRI catChrV17e
felCat3	felCat3, Cat, Mar. 2006, Broad Institute Release 3
panTro4	panTro4, Chimp, Feb. 2011, CGSC Build 2.1.4
panTro3	panTro3, Chimp, Oct. 2010, CGSC Build 2.1.3
panTro2	panTro2, Chimp, Mar. 2006, CGSC Build 2.1
panTro1	panTro1, Chimp, Nov. 2003, CGSC Build 1.1
criGri1	criGri1, Chinese hamster, Jul. 2013, Beijing Genomics Institution-Shenzhen C_griseus_v1.0
bosTau8	bosTau8, Cow, Jun. 2014, University of Maryland v3.1.1
bosTau7	bosTau7, Cow, Oct. 2011, Baylor College of Medicine HGSC Btau_4.6.1
bosTau6	bosTau6, Cow, Nov. 2009, University of Maryland v3.1
bosTau4	bosTau4, Cow, Oct. 2007, Baylor College of Medicine HGSC Btau_4.0
bosTau3	bosTau3, Cow, Aug. 2006, Baylor College of Medicine HGSC Btau_3.1
bosTau2	bosTau2, Cow, Mar. 2005, Baylor College of Medicine HGSC Btau_2.0
canFam3	canFam3, Dog, Sep. 2011, Broad Institute v3.1
canFam2	canFam2, Dog, May 2005, Broad Institute v2.0
canFam1	canFam1, Dog, Jul. 2004, Broad Institute v1.0
turTru2	turTru2, Dolphin, Oct. 2011, Baylor College of Medicine Ttru_1.4
loxAfr3	loxAfr3, Elephant, Jul. 2009, Broad Institute LoxAfr3
musFur1	musFur1, Ferret, Apr. 2011, Ferret Genome Sequencing Consortium MusPutFur1.0
nomLeu3	nomLeu3, Gibbon, Oct. 2012, Gibbon Genome Sequencing Consortium Nleu3.0
nomLeu2	nomLeu2, Gibbon, Jun. 2011, Gibbon Genome Sequencing Consortium Nleu1.1
nomLeu1	nomLeu1, Gibbon, Jan. 2010, Gibbon Genome Sequencing Consortium Nleu1.0
gorGor3	gorGor3, Gorilla, May 2011, Wellcome Trust Sanger Institute gorGor3.1
cavPor3	cavPor3, Guinea pig, Feb. 2008, Broad Institute cavPor3
eriEur2	eriEur2, Hedgehog, May 2012, Broad Institute EriEur2.0
eriEur1	eriEur1, Hedgehog, Jun. 2006, Broad Institute Draft_v1
equCab2	equCab2, Horse, Sep. 2007, Broad Institute EquCab2
equCab1	equCab1, Horse, Jan. 2007, Broad Institute EquCab1
dipOrd1	dipOrd1, Kangaroo rat, Jul. 2008, Baylor/Broad Institute DipOrd1.0
triMan1	triMan1, Manatee, Oct. 2011, Broad Institute TriManLat1.0
calJac3	calJac3, Marmoset, Mar. 2009, WUSTL Callithrix_jacchus-v3.2
calJac1	calJac1, Marmoset, Jun. 2007, WUSTL Callithrix_jacchus-v2.0.2
pteVam1	pteVam1, Megabat, Jul. 2008, Broad Institute Ptevap1.0
myoLuc2	myoLuc2, Microbat, Jul. 2010, Broad Institute MyoLuc2.0
balAcu1	balAcu1, Minke whale, Oct. 2013, KORDI BalAcu1.0
mm10	mm10, Mouse, Dec. 2011, Genome Reference Consortium GRCm38
mm9	mm9, Mouse, Jul. 2007, NCBI Build 37
mm8	mm8, Mouse, Feb. 2006, NCBI Build 36
mm7	mm7, Mouse, Aug. 2005, NCBI Build 35
micMur2	micMur2, Mouse lemur, May 2015, Baylor/Broad Institute Mmur_2.0
micMur1	micMur1, Mouse lemur, Jul. 2007, Broad Institute MicMur1.0
hetGla2	hetGla2, Naked mole-rat, Jan. 2012, Broad Institute HetGla_female_1.0
hetGla1	hetGla1, Naked mole-rat, Jul. 2011, Beijing Genomics Institute HetGla_1.0
monDom5	monDom5, Opossum, Oct. 2006, Broad Institute release MonDom5
monDom4	monDom4, Opossum, Jan. 2006, Broad Institute release MonDom4
monDom1	monDom1, Opossum, Oct. 2004, Broad Institute release MonDom1
ponAbe2	ponAbe2, Orangutan, Jul. 2007, WUSTL Pongo_albelii-2.0.2
ailMel1	ailMel1, Panda, Dec. 2009, BGI-Shenzhen AilMel 1.0
susScr3	susScr3, Pig, Aug. 2011, Swine Genome Sequencing Consortium Sscrofa10.2
susScr2	susScr2, Pig, Nov. 2009, Swine Genome Sequencing Consortium Sscrofa9.2
ochPri3	ochPri3, Pika, May 2012, Broad Institute OchPri3.0
ochPri2	ochPri2, Pika, Jul. 2008, Broad Institute OchPri2
ornAna2	ornAna2, Platypus, Feb. 2007, WUSTL v5.0.1
ornAna1	ornAna1, Platypus, Mar. 2007, WUSTL v5.0.1
oryCun2	oryCun2, Rabbit, Apr. 2009, Broad Institute release OryCun2
rn6	rn6, Rat, Jul. 2014, RGSC Rnor_6.0
rn5	rn5, Rat, Mar. 2012, RGSC Rnor_5.0
rn4	rn4, Rat, Nov. 2004, Baylor College of Medicine HGSC v3.4
rn3	rn3, Rat, Jun. 2003, Baylor College of Medicine HGSC v3.1
rheMac3	rheMac3, Rhesus, Oct. 2010, Beijing Genomics Institute CR_1.0
rheMac2	rheMac2, Rhesus, Jan. 2006, Baylor College of Medicine HGSC v1.0 Mmul_051212
proCap1	proCap1, Rock hyrax, Jul. 2008, Baylor College of Medicine HGSC Procap1.0
oviAri3	oviAri3, Sheep, Aug. 2012, ISGC Oar_v3.1
oviAri1	oviAri1, Sheep, Feb. 2010, ISGC Ovis aries 1.0
sorAra2	sorAra2, Shrew, Aug. 2008, Broad Institute SorAra2.0
sorAra1	sorAra1, Shrew, Jun. 2006, Broad Institute SorAra1.0
choHof1	choHof1, Sloth, Jul. 2008, Broad Institute ChoHof1.0
speTri2	speTri2, Squirrel, Nov. 2011, Broad Institute SpeTri2.0
saiBol1	saiBol1, Squirrel monkey, Oct. 2011, Broad Institute SaiBol1.0
tarSyr2	tarSyr2, Tarsier, Sep. 2013, WashU Tarsius_syrichta-2.0.1
tarSyr1	tarSyr1, Tarsier, Aug. 2008, WUSTL/Broad Institute Tarsyr1.0
sarHar1	sarHar1, Tasmanian devil, Feb. 2011, Wellcome Trust Sanger Institute Devil_refv7.0
echTel2	echTel2, Tenrec, Nov. 2012, Broad Institute EchTel2.0
echTel1	echTel1, Tenrec, Jul. 2005, Broad Institute echTel1
tupBel1	tupBel1, Tree shrew, Dec. 2006, Broad Institute Tupbel1.0
macEug2	macEug2, Wallaby, Sep. 2009, Tammar Wallaby Genome Sequencing Consortium Meug_1.1
cerSim1	cerSim1, White rhinoceros, May 2012, Broad Institute CerSimSim1.0
allMis1	allMis1, American alligator, Aug. 2012, Int. Crocodilian Genomes Working Group allMis0.2
gadMor1	gadMor1, Atlantic cod, May 2010, Genofisk GadMor_May2010
melUnd1	melUnd1, Budgerigar, Sep. 2011, WUSTL v6.3
galGal4	galGal4, Chicken, Nov.
2011, ICGC Gallus-gallus-4.0
galGal3	galGal3, Chicken, May 2006, WUSTL Gallus-gallus-2.1
galGal2	galGal2, Chicken, Feb. 2004, WUSTL Gallus-gallus-1.0
latCha1	latCha1, Coelacanth, Aug. 2011, Broad Institute LatCha1
calMil1	calMil1, Elephant shark, Dec. 2013, IMCB Callorhinchus_milli_6.1.3
fr3	fr3, Fugu, Oct. 2011, JGI v5.0
fr2	fr2, Fugu, Oct. 2004, JGI v4.0
fr1	fr1, Fugu, Aug. 2002, JGI v3.0
petMar2	petMar2, Lamprey, Sep. 2010, WUGSC 7.0
petMar1	petMar1, Lamprey, Mar. 2007, WUSTL v3.0
anoCar2	anoCar2, Lizard, May 2010, Broad Institute AnoCar2
anoCar1	anoCar1, Lizard, Feb. 2007, Broad Institute AnoCar1
oryLat2	oryLat2, Medaka, Oct. 2005, NIG v1.0
geoFor1	geoFor1, Medium ground finch, Apr. 2012, BGI GeoFor_1.0 / NCBI 13302
oreNil2	oreNil2, Nile tilapia, Jan. 2011, Broad Institute Release OreNil1.1
chrPic1	chrPic1, Painted turtle, Dec. 2011, IPTGSC Chrysemys_picta_bellii-3.0.1
gasAcu1	gasAcu1, Stickleback, Feb. 2006, Broad Institute Release 1.0
tetNig2	tetNig2, Tetraodon, Mar. 2007, Genoscope v7
tetNig1	tetNig1, Tetraodon, Feb. 2004, Genoscope v7
melGal1	melGal1, Turkey, Dec. 2009, Turkey Genome Consortium v2.01
xenTro7	xenTro7, X. tropicalis, Sep. 2012, JGI v.7.0
xenTro3	xenTro3, X. tropicalis, Nov. 2009, JGI v.4.2
xenTro2	xenTro2, X. tropicalis, Aug. 2005, JGI v.4.1
xenTro1	xenTro1, X. tropicalis, Oct. 2004, JGI v.3.0
taeGut2	taeGut2, Zebra finch, Feb. 2013, WashU taeGut324
taeGut1	taeGut1, Zebra finch, Jul. 2008, WUSTL v3.2.4
danRer10	danRer10, Zebrafish, Sep. 2014, Genome Reference Consortium GRCz10 
danRer7	danRer7, Zebrafish, Jul. 2010, Sanger Institute Zv9 
danRer6	danRer6, Zebrafish, Dec. 2008, Sanger Institute Zv8 
danRer5	danRer5, Zebrafish, Jul. 2007, Sanger Institute Zv7 
danRer4	danRer4, Zebrafish, Mar. 2006, Sanger Institute Zv6 
danRer3	danRer3, Zebrafish, May 2005, Sanger Institute Zv5 
ci2	ci2, C. intestinalis, Mar. 2005, JGI v2.0
ci1	ci1, C. intestinalis, Dec. 2002, JGI v1.0
braFlo1	braFlo1, Lancelet, Mar. 2006, JGI v1.0
strPur2	strPur2, S. purpuratus, Sep. 2006, Baylor College of Medicine HGSC v. Spur 2.1
strPur1	strPur1, S. purpuratus, Apr. 2005, Baylor College of Medicine HGSC v. Spur_0.5
apiMel2	apiMel2, A. mellifera, Jan. 2005, Baylor College of Medicine HGSC v.Amel_2.0 
apiMel1	apiMel1, A. mellifera, Jul. 2004, Baylor College of Medicine HGSC v.Amel_1.2 
anoGam1	anoGam1, A. gambiae, Feb. 2003, IAGP v.MOZ2
droAna2	droAna2, D. ananassae, Aug. 2005, Agencourt Arachne release
droAna1	droAna1, D. ananassae, Jul. 2004, TIGR Celera release
droEre1	droEre1, D. erecta, Aug. 2005, Agencourt Arachne release
droGri1	droGri1, D. grimshawi, Aug. 2005, Agencourt Arachne release
dm6	dm6, D. melanogaster, Aug. 2014, BDGP Release 6 + ISO1 MT
dm3	dm3, D. melanogaster, Apr. 2006, BDGP Release 5
dm2	dm2, D. melanogaster, Apr. 2004, BDGP Release 4
dm1	dm1, D. melanogaster, Jan. 2003, BDGP Release 3
droMoj2	droMoj2, D. mojavensis, Aug. 2005, Agencourt Arachne release
droMoj1	droMoj1, D. mojavensis, Aug. 2004, Agencourt Arachne release
droPer1	droPer1, D. persimilis, Oct. 2005, Broad Institute release
dp3	dp3, D. pseudoobscura, Nov. 2004, Flybase Release 1.0
dp2	dp2, D. pseudoobscura, Aug. 2003, Baylor College of Medicine HGSC Freeze 1
droSec1	droSec1, D. sechellia, Oct. 2005, Broad Institute Release 1.0
droSim1	droSim1, D. simulans, Apr. 2005, WUSTL Release 1.0
droVir2	droVir2, D. virilis, Aug. 2005, Agencourt Arachne release
droVir1	droVir1, D. virilis, Jul. 2004, Agencourt Arachne release
droYak2	droYak2, D. yakuba, Nov. 2005, WUSTL Release 2.0
droYak1	droYak1, D. yakuba, Apr. 2004, WUSTL Release 1.0
caePb2	caePb2, C. brenneri, Feb. 2008, WUSTL 6.0.1
caePb1	caePb1, C. brenneri, Jan. 2007, WUSTL 4.0
cb3	cb3, C. briggsae, Jan. 2007, WUSTL Cb3
cb1	cb1, C. briggsae, Jul. 2002, WormBase v. cb25.agp8
ce10	ce10, C. elegans, Oct. 2010, WormBase v. WS220
ce6	ce6, C. elegans, May 2008, WormBase v. WS190
ce4	ce4, C. elegans, Jan. 2007, WormBase v. WS170
ce2	ce2, C. elegans, Mar. 2004, WormBase v. WS120
caeJap1	caeJap1, C. japonica, Mar. 2008, WUSTL 3.0.2
caeRem3	caeRem3, C. remanei, May 2007, WUSTL 15.0.1
caeRem2	caeRem2, C. remanei, Mar. 2006, WUSTL 1.0
priPac1	priPac1, P. pacificus, Feb. 2007, WUSTL 5.0
aplCal1	aplCal1, Sea Hare, Sep. 2008, Broad Release Aplcal2.0
sacCer3	sacCer3, Yeast, April 2011, SGD April 2011 sequence
sacCer2	sacCer2, Yeast, June 2008, SGD June 2008 sequence
sacCer1	sacCer1, Yeast, Oct. 2003, SGD 1 Oct 2003 sequence
eboVir3	eboVir3, Ebola Virus, June 2014, Sierra Leone 2014 (G3683/KM034562.1)