view gtf2fasta.xml @ 0:0dedb6ecf305 draft default tip

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−<tool id='id_gtf2fasta' name='gtf2fasta' version='1.0'>
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−<description>
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−        Converts gtf  to fasta
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−</description>
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− <requirements>
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− <requirement type="package" version="2.0.9">tophat2</requirement>
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− </requirements>
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−<command >gtf_to_fasta $gtf $genome $fasta</command>
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−<inputs>
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−        <param name='gtf' type='data' format="gtf"  optional='false' label='gtf_file' help='input gtf file'/>
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−        <param name='genome' type='data' format="fasta" optional='false' label='genome_file' help='input genome'/>
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−</inputs>
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−<outputs>
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−        <data format='fasta' name='fasta' label='fasta file'/>
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−</outputs>
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−<help>
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−**What it does**
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−  Converts gtf file to fasta using reference genome
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−
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−</help>
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−</tool>
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