diff gtf2fasta.xml @ 0:cc71440b759f draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gtf2fasta.xml	Tue Sep 22 01:58:00 2015 -0400
@@ -0,0 +1,30 @@
+<tool id='id_gtf2fasta' name='gtf2fasta' version='1.0'>
+
+<description>
+        Converts gtf  to fasta
+</description>
+ <requirements>
+ <requirement type="package" version="2.0.9">tophat2</requirement>
+ </requirements>
+
+<command >gtf_to_fasta $gtf $genome $fasta</command>
+
+<inputs>
+        <param name='gtf' type='data' format="gtf"  optional='false' label='gtf_file' help='input gtf file'/>
+        <param name='genome' type='data' format="fasta" optional='false' label='genome_file' help='input genome'/>
+</inputs>
+
+
+<outputs>
+        <data format='fasta' name='fasta' label='fasta file'/>
+</outputs>
+
+
+<help>
+**What it does**
+  Converts gtf file to fasta using reference genome
+
+</help>
+
+</tool>
+