Mercurial > repos > mytest > testing12
changeset 0:4734f7881535 draft default tip
Uploaded
| author | mytest |
|---|---|
| date | Sat, 01 Aug 2015 06:48:18 -0400 |
| parents | |
| children | |
| files | gtf2fasta.xml tool_dependency.xml |
| diffstat | 2 files changed, 39 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/gtf2fasta.xml Sat Aug 01 06:48:18 2015 -0400 @@ -0,0 +1,30 @@ +<tool id='id_gtf2fasta' name='gtf2fasta' version='1.0'> + +<description> + Converts gtf to fasta +</description> + <requirements> + <requirement type="package" version="2.0.9">tophat2</requirement> + </requirements> + +<command >gtf_to_fasta $gtf $genome $fasta</command> + +<inputs> + <param name='gtf' type='data' format="gtf" optional='false' label='gtf_file' help='input gtf file'/> + <param name='genome' type='data' format="fasta" optional='false' label='genome_file' help='input genome'/> +</inputs> + + +<outputs> + <data format='fasta' name='fasta' label='fasta file'/> +</outputs> + + +<help> +**What it does** + Converts gtf file to fasta using reference genome + +</help> + +</tool> +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependency.xml Sat Aug 01 06:48:18 2015 -0400 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<tool_dependency> +<package name="tophat2" version="2.0.9"> +<repository toolshed="http://toolshed.g2.bx.psu.edu" name="tophat2" owner="devteam" changeset_revision="ae06af1118dc" /> +</package> +<repository toolshed="http://toolshed.g2.bx.psu.edu" name="ncbi_blast_plus" owner="devteam" changeset_revision="2fe07f50a41e" /> +<repository toolshed="http://toolshed.g2.bx.psu.edu" name="cufflinks" owner="devteam" changeset_revision="9aab29e159a7" /> +<repository toolshed="http://toolshed.g2.bx.psu.edu" name="cuffmerge" owner="devteam" changeset_revision="b6e3849293b1" /> +</tool_dependency>