|
0
|
1 <tool id='id_trinity_stats' name='Trinity Stats' version='1.0'>
|
|
|
2 <description> check stats... </description>
|
|
|
3
|
|
|
4 <requirements>
|
|
|
5 <requirement type="package" version="2013_08_14">trinityrnaseq</requirement>
|
|
|
6 <requirement type="set_environment">TRINITY_HOME</requirement>
|
|
|
7
|
|
|
8 </requirements>
|
|
|
9 <command >perl \$TRINITY_HOME/util/TrinityStats.pl $fastafile
|
|
|
10 > $statsfile 2>&1;
|
|
|
11 </command>
|
|
|
12
|
|
|
13 <inputs>
|
|
|
14 <!-- Required -->
|
|
|
15
|
|
|
16 <param name='fastafile' type="data" format="fasta" label='fastafile' help='Assembled fasta file'>
|
|
|
17 </param>
|
|
|
18
|
|
|
19 <!-- Optional -->
|
|
|
20
|
|
|
21 </inputs>
|
|
|
22 <outputs>
|
|
|
23 <data name='statsfile' format='text' label="${tool.name} on ${on_string}: "/>
|
|
|
24 </outputs>
|
|
|
25 </tool>
|
