Mercurial > repos > namhsuya > te_finder

comparison test-data/TEs.gtf @ 0:b81a83c743d3 draft default tip

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author namhsuya
date Tue, 09 Aug 2022 06:58:49 +0000
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-1:000000000000 0:b81a83c743d3
1 S_3n6.54 RepeatMasker similarity 1734 2492 0.0 + . Target "Motif:Hornet-small" 1 759
2 S_3n6.54 RepeatMasker similarity 7002 7777 0.0 + . Target "Motif:Hornet-small" 1 759
3 S_3n6.54 RepeatMasker similarity 8181 8457 23.4 + . Target "Motif:Frodo" 80 345
4 S_3n6.54 RepeatMasker similarity 8538 8693 16.0 + . Target "Motif:Frodo" 440 604
5 U_32 RepeatMasker similarity 1792 1954 27.0 - . Target "Motif:Hop2" 2645 2808
6 U_32 RepeatMasker similarity 3324 6310 1.9 + . Target "Motif:Hornet" 1 2995
7 U_32 RepeatMasker similarity 9977 10735 0.0 + . Target "Motif:Hornet-small" 1 759
8 U_32 RepeatMasker similarity 12284 12531 31.2 - . Target "Motif:HopAY267761" 2295 2542
9 U_32 RepeatMasker similarity 14704 14880 28.8 - . Target "Motif:SkippyFv" 26 209
10 U_39 RepeatMasker similarity 11436 13291 22.2 - . Target "Motif:Fot1Active" 45 1897
11 U_39 RepeatMasker similarity 13285 13331 14.9 - . Target "Motif:Fot1Active" 1859 1907
12 U_39 RepeatMasker similarity 13293 13473 23.7 - . Target "Motif:hAT210-short-Active" 248 428
13 U_39 RepeatMasker similarity 13616 13701 26.7 - . Target "Motif:hAT210-short-Active" 8 93
14 U_39 RepeatMasker similarity 13623 13732 25.7 - . Target "Motif:Fot1Active" 28 138
15 U_39 RepeatMasker similarity 13854 13914 0.0 + . Target "Motif:Strider" 4 64
16 U_9 RepeatMasker similarity 3434 3621 4.8 - . Target "Motif:Gollum-Fv4" 1 188
17 U_9 RepeatMasker similarity 27414 28067 4.3 + . Target "Motif:Foxy2" 3 650
18 U_9 RepeatMasker similarity 34938 35293 29.1 - . Target "Motif:Hop2" 2561 2912
19 U_9 RepeatMasker similarity 35614 37453 33.2 - . Target "Motif:HopAY267761" 219 2046
20 U_9 RepeatMasker similarity 38327 38719 25.2 - . Target "Motif:hAT210-short-Active" 37 428
21 U_9 RepeatMasker similarity 38862 38992 20.3 + . Target "Motif:Tac" 1 131
22 U_9 RepeatMasker similarity 39383 39676 30.8 - . Target "Motif:SkippyFv" 1359 1652
23 U_9 RepeatMasker similarity 40797 40987 26.3 + . Target "Motif:ForetFv" 2916 3106
24 U_9 RepeatMasker similarity 41020 41950 33.9 - . Target "Motif:SkippyFv" 1055 2018
25 U_9 RepeatMasker similarity 42804 42939 25.4 - . Target "Motif:SkippyFv" 46 183
26 U_9 RepeatMasker similarity 42928 43066 20.7 + . Target "Motif:SkippyFv" 69 209
27 U_9 RepeatMasker similarity 42948 43062 20.4 - . Target "Motif:SkippyL34658" 225 340
28 U_9 RepeatMasker similarity 43223 43268 23.9 + . Target "Motif:SkippyFv" 405 450
29 U_9 RepeatMasker similarity 43642 44404 23.7 - . Target "Motif:ForetFv" 1065 1890
30 U_9 RepeatMasker similarity 44390 44567 24.2 + . Target "Motif:Foret1X65452" 671 851
31 U_9 RepeatMasker similarity 44568 45541 25.7 + . Target "Motif:Foret1X65452" 918 1884
32 U_9 RepeatMasker similarity 45662 46224 33.0 + . Target "Motif:SkippyFv" 1097 1659
33 U_9 RepeatMasker similarity 46220 47160 32.5 + . Target "Motif:SkippyFv" 1700 2667
34 U_9 RepeatMasker similarity 47444 47836 18.3 - . Target "Motif:hAT210-short-Active" 35 428
35 U_9 RepeatMasker similarity 49033 49119 32.2 - . Target "Motif:SkippyFv" 375 462
36 U_9 RepeatMasker similarity 49264 49427 27.6 - . Target "Motif:SkippyFv" 40 209
37 U_9 RepeatMasker similarity 49297 49455 34.2 + . Target "Motif:SkippyL34658" 254 419
38 U_9 RepeatMasker similarity 49455 49542 17.1 - . Target "Motif:SkippyFv" 83 172
39 U_9 RepeatMasker similarity 49543 49748 23.5 + . Target "Motif:SkippyFv" 1 211
40 U_9 RepeatMasker similarity 50626 51099 26.6 + . Target "Motif:SkippyFv" 1072 1548
41 U_9 RepeatMasker similarity 51139 51420 27.0 + . Target "Motif:SkippyFv" 2113 2393
42 U_9 RepeatMasker similarity 51695 52487 25.7 + . Target "Motif:SkippyFv" 2359 3232
43 U_9 RepeatMasker similarity 52486 52569 19.5 + . Target "Motif:SkippyFv" 3485 3568
44 U_9 RepeatMasker similarity 52633 52977 35.9 + . Target "Motif:SkippyFv" 1643 1987
45 U_9 RepeatMasker similarity 53105 53580 24.5 - . Target "Motif:ForetFv" 2593 3096
46 U_9 RepeatMasker similarity 55184 55388 21.5 + . Target "Motif:ForetFv" 2602 2807
47 U_9 RepeatMasker similarity 55385 55428 15.9 + . Target "Motif:Fot1Active" 37 80
48 U_9 RepeatMasker similarity 55405 55504 19.6 + . Target "Motif:hAT210-short-Active" 4 106
49 U_9 RepeatMasker similarity 55759 55825 12.9 + . Target "Motif:hAT210-short-Active" 363 428
50 U_9 RepeatMasker similarity 55782 55827 19.6 - . Target "Motif:Fot1Active" 35 80
51 U_9 RepeatMasker similarity 55870 56016 25.0 - . Target "Motif:ForetFv" 1789 1932
52 U_9 RepeatMasker similarity 55872 55997 24.6 - . Target "Motif:Foret1X65452" 1046 1173
53 U_9 RepeatMasker similarity 56922 58023 24.3 + . Target "Motif:ForetFv" 633 1706
54 U_9 RepeatMasker similarity 57179 58049 21.8 + . Target "Motif:Foret1X65452" 125 976
55 U_9 RepeatMasker similarity 58036 58425 37.8 + . Target "Motif:SkippyL34658" 2270 2664
56 U_9 RepeatMasker similarity 58950 59186 34.9 - . Target "Motif:SkippyFv" 4401 4641
57 U_9 RepeatMasker similarity 60402 60921 32.0 - . Target "Motif:SkippyFv" 3576 4101
58 U_9 RepeatMasker similarity 60936 61628 27.4 - . Target "Motif:SkippyFv" 2785 3479
59 U_9 RepeatMasker similarity 61657 62079 25.1 + . Target "Motif:hAT210-short-Active" 9 432
60 U_9 RepeatMasker similarity 62079 62351 26.4 - . Target "Motif:SkippyFv" 2493 2774
61 U_9 RepeatMasker similarity 63029 63201 38.4 - . Target "Motif:SkippyL34658" 318 503
62 U_9 RepeatMasker similarity 63210 63598 18.8 - . Target "Motif:hAT210-short-Active" 11 401
63 U_9 RepeatMasker similarity 63622 63720 21.2 + . Target "Motif:SkippyFv" 110 209
64 U_9 RepeatMasker similarity 64067 64493 19.9 + . Target "Motif:hAT210-short-Active" 1 428
65 U_9 RepeatMasker similarity 64560 72405 0.0 - . Target "Motif:SkippyL34658" 1 7846