Mercurial > repos > nanettec > frequency_sliding
diff frequency_sliding/test-data/input/frequency.txt @ 0:9b835eab8a1d draft
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| author | nanettec |
|---|---|
| date | Fri, 18 Mar 2016 05:22:30 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/frequency_sliding/test-data/input/frequency.txt Fri Mar 18 05:22:30 2016 -0400 @@ -0,0 +1,1020 @@ +int.id chr marker interval cM bp length_cM num.eQTL.all num.eQTL.cis num.eQTL.trans num.genes +1 1 1 0.0001 0.0 2038278 2.0 39.0 6.0 26.0 12.0 +2 1 1 0.0201 2.0 2466324 2.0 11.0 2.0 7.0 34.0 +3 1 1 0.0401 4.0 2894370 2.0 6.0 3.0 3.0 29.0 +4 1 1 0.0601 6.0 3322416 1.53 8.0 3.0 5.0 10.0 +5 1 2 0.0754 7.53 3649871 2.0 37.0 11.0 21.0 18.0 +6 1 2 0.0954 9.53 4095673 2.0 7.0 3.0 3.0 12.0 +7 1 2 0.1154 11.53 4541476 2.0 5.0 1.0 4.0 17.0 +8 1 2 0.1354 13.53 4987278 2.0 7.0 4.0 2.0 19.0 +9 1 2 0.1554 15.53 5433081 2.0 6.0 2.0 2.0 15.0 +10 1 2 0.1754 17.53 5878883 1.24 9.0 1.0 8.0 4.0 +11 1 3 0.1878 18.77 6155281 2.0 26.0 4.0 19.0 22.0 +12 1 3 0.2078 20.77 6781464 2.0 3.0 1.0 2.0 31.0 +13 1 3 0.2278 22.77 7407646 2.0 6.0 2.0 4.0 27.0 +14 1 3 0.2478 24.77 8033829 2.0 2.0 0 1.0 27.0 +15 1 3 0.2678 26.77 8660012 2.0 4.0 3.0 0 8.0 +16 1 3 0.2878 28.77 9286194 2.0 2.0 0 1.0 14.0 +17 1 3 0.3078 30.77 9912377 2.0 3.0 1.0 2.0 12.0 +18 1 3 0.3278 32.77 10538560 2.0 6.0 2.0 2.0 14.0 +19 1 3 0.3478 34.77 11164742 2.0 14.0 3.0 6.0 11.0 +20 1 3 0.3678 36.77 11790925 1.94 22.0 2.0 16.0 29.0 +21 1 4 0.3872 38.71 12398322 2.0 88.0 10.0 64.0 19.0 +22 1 4 0.4072 40.71 12998447 2.0 10.0 1.0 7.0 9.0 +23 1 4 0.4272 42.71 13598572 1.91 5.0 0 4.0 20.0 +24 1 5 0.4463 44.62 14171692 2.0 16.0 4.0 8.0 26.0 +25 1 5 0.4663 46.62 15319046 2.0 3.0 0 1.0 38.0 +26 1 5 0.4863 48.62 16466401 0.11 0 0 0 0 +27 1 6 0.4874 48.73 16529505 2.0 17.0 5.0 8.0 23.0 +28 1 6 0.5074 50.73 17676859 2.0 4.0 2.0 1.0 34.0 +29 1 6 0.5274 52.73 18824214 0.48 11.0 5.0 5.0 4.0 +30 1 7 0.5322 53.21 19099579 2.0 15.0 7.0 7.0 38.0 +31 1 7 0.5522 55.21 20991425 2.0 5.0 3.0 1.0 58.0 +32 1 7 0.5722 57.21 22883271 2.0 9.0 7.0 2.0 35.0 +33 1 7 0.5922 59.21 24775117 2.0 3.0 1.0 2.0 58.0 +34 1 7 0.6122 61.21 26666963 2.0 3.0 2.0 1.0 45.0 +35 1 7 0.6322 63.21 28558809 2.0 3.0 1.0 2.0 24.0 +36 1 7 0.6522 65.21 30450655 2.0 8.0 6.0 0 48.0 +37 1 7 0.6722 67.21 32342501 2.0 12.0 8.0 3.0 43.0 +38 1 7 0.6922 69.21 34234347 0.76 5.0 5.0 0 20.0 +39 1 8 0.6998 69.97 34953249 2.0 24.0 9.0 11.0 30.0 +40 1 8 0.7198 71.97 36421871 2.0 8.0 3.0 3.0 28.0 +41 1 8 0.7398 73.97 37890493 2.0 5.0 2.0 2.0 48.0 +42 1 8 0.7598 75.97 39359115 2.0 4.0 2.0 0 33.0 +43 1 8 0.7798 77.97 40827737 2.0 4.0 2.0 2.0 37.0 +44 1 8 0.7998 79.97 42296359 1.9 8.0 4.0 4.0 33.0 +45 1 9 0.8188 81.87 43691550 2.0 35.0 7.0 19.0 24.0 +46 1 9 0.8388 83.87 45292235 2.0 7.0 3.0 3.0 46.0 +47 1 9 0.8588 85.87 46892920 2.0 3.0 1.0 2.0 25.0 +48 1 9 0.8788 87.87 48493606 2.0 7.0 4.0 1.0 32.0 +49 1 9 0.8988 89.87 50094291 2.0 5.0 5.0 0 28.0 +50 1 9 0.9188 91.87 51694976 2.0 6.0 3.0 3.0 41.0 +51 1 9 0.9388 93.87 53295661 2.0 17.0 12.0 3.0 37.0 +52 1 9 0.9588 95.87 54896346 0.23 11.0 2.0 4.0 5.0 +53 1 10 0.9611 96.1 55080425 2.0 63.0 28.0 28.0 48.0 +54 1 10 0.9811 98.1 56970721 2.0 18.0 10.0 6.0 25.0 +55 1 10 1.0011 100.1 58861017 2.0 9.0 4.0 2.0 39.0 +56 1 10 1.0211 102.1 60751312 2.0 5.0 2.0 2.0 48.0 +57 1 10 1.0411 104.1 62641608 2.0 6.0 2.0 1.0 27.0 +58 1 10 1.0611 106.1 64531904 2.0 5.0 3.0 2.0 21.0 +59 1 10 1.0811 108.1 66422200 2.0 5.0 4.0 1.0 33.0 +60 1 10 1.1011 110.1 68312495 2.0 7.0 1.0 4.0 28.0 +61 1 10 1.1211 112.1 70202791 0.6 4.0 0 4.0 10.0 +62 1 11 1.1271 112.7 70769880 2.0 37.0 7.0 25.0 27.0 +63 1 11 1.1471 114.7 72592319 2.0 4.0 0 3.0 23.0 +64 1 11 1.1671 116.7 74414759 2.0 3.0 0 1.0 24.0 +65 1 11 1.1871 118.7 76237198 2.0 1.0 0 1.0 26.0 +66 1 11 1.2071 120.7 78059638 2.0 6.0 1.0 2.0 18.0 +67 1 11 1.2271 122.7 79882077 2.0 9.0 2.0 6.0 26.0 +68 1 11 1.2471 124.7 81704517 2.0 4.0 2.0 1.0 25.0 +69 1 11 1.2671 126.7 83526956 0.13 15.0 5.0 7.0 0 +70 1 12 1.2684 126.83 83645415 2.0 46.0 17.0 17.0 131.0 +71 1 12 1.2884 128.83 96061299 2.0 17.0 9.0 5.0 114.0 +72 1 12 1.3084 130.83 108477184 2.0 10.0 6.0 4.0 74.0 +73 1 12 1.3284 132.83 120893068 2.0 11.0 5.0 3.0 42.0 +74 1 12 1.3484 134.83 133308952 2.0 8.0 4.0 2.0 63.0 +75 1 12 1.3684 136.83 145724837 2.0 12.0 5.0 3.0 109.0 +76 1 12 1.3884 138.83 158140721 2.0 14.0 7.0 5.0 107.0 +77 1 12 1.4084 140.83 170556606 1.86 12.0 5.0 3.0 173.0 +78 1 13 1.4270 142.69 182103378 2.0 67.0 24.0 30.0 38.0 +79 1 13 1.4470 144.69 183913368 2.0 15.0 7.0 6.0 14.0 +80 1 13 1.4670 146.69 185723358 2.0 21.0 10.0 10.0 11.0 +81 1 13 1.4870 148.69 187533348 0.28 4.0 1.0 1.0 7.0 +82 1 14 1.4898 148.97 187786747 2.0 28.0 9.0 16.0 44.0 +83 1 14 1.5098 150.97 189596737 2.0 9.0 4.0 4.0 32.0 +84 1 14 1.5298 152.97 191406727 2.0 28.0 15.0 7.0 30.0 +85 1 14 1.5498 154.97 193216717 2.0 16.0 5.0 10.0 42.0 +86 1 14 1.5698 156.97 195026707 2.0 15.0 1.0 12.0 45.0 +87 1 14 1.5898 158.97 196836697 2.0 35.0 4.0 24.0 30.0 +88 1 14 1.6098 160.97 198646687 2.0 74.0 9.0 55.0 33.0 +89 1 14 1.6298 162.97 200456677 1.31 75.0 4.0 65.0 29.0 +90 1 15 1.6429 164.28 201642220 2.0 83.0 4.0 66.0 30.0 +91 1 15 1.6629 166.28 203363547 2.0 13.0 3.0 8.0 30.0 +92 1 15 1.6829 168.28 205084874 2.0 6.0 0 6.0 36.0 +93 1 15 1.7029 170.28 206806201 2.0 5.0 1.0 3.0 29.0 +94 1 15 1.7229 172.28 208527528 2.0 7.0 2.0 4.0 27.0 +95 1 15 1.7429 174.28 210248855 2.0 10.0 1.0 6.0 29.0 +96 1 15 1.7629 176.28 211970183 2.0 22.0 14.0 7.0 30.0 +97 1 15 1.7829 178.28 213691510 0.84 10.0 4.0 4.0 7.0 +98 1 16 1.7913 179.12 214414467 2.0 85.0 15.0 55.0 47.0 +99 1 16 1.8113 181.12 216838996 2.0 14.0 4.0 9.0 42.0 +100 1 16 1.8313 183.12 219263525 2.0 7.0 3.0 3.0 58.0 +101 1 16 1.8513 185.12 221688053 2.0 8.0 1.0 7.0 51.0 +102 1 16 1.8713 187.12 224112582 0.12 6.0 0 6.0 2.0 +103 1 17 1.8725 187.24 224258054 2.0 28.0 5.0 18.0 57.0 +104 1 17 1.8925 189.24 227061670 2.0 15.0 5.0 8.0 60.0 +105 1 17 1.9125 191.24 229865285 2.0 31.0 12.0 17.0 53.0 +106 1 17 1.9325 193.24 232668901 0.18 10.0 2.0 7.0 2.0 +107 1 18 1.9343 193.42 232921226 2.0 39.0 7.0 29.0 28.0 +108 1 18 1.9543 195.42 234458043 2.0 17.0 6.0 9.0 39.0 +109 1 18 1.9743 197.42 235994861 2.0 14.0 2.0 9.0 19.0 +110 1 18 1.9943 199.42 237531678 2.0 34.0 3.0 25.0 20.0 +111 1 18 2.0143 201.42 239068496 0.71 45.0 4.0 35.0 8.0 +112 1 19 2.0214 202.13 239614066 2.0 259.0 19.0 201.0 21.0 +113 1 19 2.0414 204.13 240718650 2.0 22.0 4.0 12.0 23.0 +114 1 19 2.0614 206.13 241823234 2.0 25.0 4.0 16.0 17.0 +115 1 19 2.0814 208.13 242927818 2.0 20.0 4.0 16.0 12.0 +116 1 19 2.1014 210.13 244032402 2.0 14.0 4.0 9.0 17.0 +117 1 19 2.1214 212.13 245136986 2.0 11.0 2.0 8.0 10.0 +118 1 19 2.1414 214.13 246241570 2.0 16.0 2.0 9.0 34.0 +119 1 19 2.1614 216.13 247346154 2.0 8.0 0 8.0 20.0 +120 1 19 2.1814 218.13 248450738 2.0 4.0 1.0 3.0 31.0 +121 1 19 2.2014 220.13 249555322 2.0 1.0 0 1.0 17.0 +122 1 19 2.2214 222.13 250659906 2.0 9.0 0 7.0 20.0 +123 1 19 2.2414 224.13 251764490 2.0 6.0 0 3.0 8.0 +124 1 19 2.2614 226.13 252869074 2.0 17.0 3.0 14.0 31.0 +125 1 19 2.2814 228.13 253973658 2.0 12.0 0 12.0 19.0 +126 1 19 2.3014 230.13 255078242 2.0 19.0 1.0 14.0 15.0 +127 1 19 2.3214 232.13 256182826 2.0 12.0 2.0 8.0 31.0 +128 1 19 2.3414 234.13 257287410 1.95 21.0 1.0 16.0 27.0 +129 1 20 2.3609 236.08 258364379 2.0 112.0 13.0 81.0 24.0 +130 1 20 2.3809 238.08 259103780 2.0 23.0 6.0 15.0 21.0 +131 1 20 2.4009 240.08 259843180 2.0 19.0 4.0 13.0 14.0 +132 1 20 2.4209 242.08 260582581 2.0 11.0 3.0 7.0 10.0 +133 1 20 2.4409 244.08 261321981 2.0 4.0 2.0 2.0 12.0 +134 1 20 2.4609 246.08 262061382 2.0 3.0 0 2.0 22.0 +135 1 20 2.4809 248.08 262800783 2.0 3.0 0 3.0 15.0 +136 1 20 2.5009 250.08 263540183 2.0 4.0 3.0 1.0 17.0 +137 1 20 2.5209 252.08 264279584 2.0 5.0 2.0 1.0 26.0 +138 1 20 2.5409 254.08 265018984 1.78 13.0 7.0 4.0 11.0 +139 1 21 2.5587 255.86 265677051 2.0 74.0 11.0 49.0 28.0 +140 1 21 2.5787 257.86 267698136 2.0 9.0 4.0 4.0 57.0 +141 1 21 2.5987 259.86 269719221 2.0 17.0 11.0 4.0 48.0 +142 1 21 2.6187 261.86 271740305 2.0 6.0 4.0 0 43.0 +143 1 21 2.6387 263.86 273761390 0.94 9.0 3.0 4.0 35.0 +144 1 22 2.6481 264.8 274711300 2.0 20.0 3.0 15.0 30.0 +145 1 22 2.6681 266.8 275580366 2.0 10.0 5.0 5.0 36.0 +146 1 22 2.6881 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3.0020 300.19 289782293 2.0 13.0 4.0 5.0 25.0 +165 1 25 3.0220 302.19 290301979 2.0 7.0 4.0 1.0 16.0 +166 1 25 3.0420 304.19 290821666 2.0 7.0 6.0 1.0 12.0 +167 1 25 3.0620 306.19 291341352 2.0 2.0 2.0 0 8.0 +168 1 25 3.0820 308.19 291861039 2.0 3.0 3.0 0 27.0 +169 1 25 3.1020 310.19 292380725 2.0 5.0 2.0 2.0 13.0 +170 1 25 3.1220 312.19 292900411 2.0 5.0 4.0 0 15.0 +171 1 25 3.1420 314.19 293420098 0.84 5.0 0 5.0 5.0 +172 1 26 3.1504 315.03 293638366 2.0 62.0 2.0 53.0 21.0 +173 1 26 3.1704 317.03 294560974 2.0 28.0 2.0 23.0 33.0 +174 1 26 3.1904 319.03 295483583 2.0 18.0 3.0 13.0 26.0 +175 1 26 3.2104 321.03 296406191 2.0 16.0 4.0 11.0 35.0 +176 1 26 3.2304 323.03 297328799 1.37 109.0 31.0 71.0 18.0 +177 1 27 3.2441 324.4 297960786 0 0 0 0 0 +178 2 1 0.0001 0.0 0 2.0 106.0 15.0 73.0 12.0 +179 2 1 0.0201 2.0 736499 2.0 35.0 7.0 23.0 37.0 +180 2 1 0.0401 4.0 1472997 2.0 32.0 11.0 16.0 36.0 +181 2 1 0.0601 6.0 2209496 2.0 21.0 9.0 9.0 40.0 +182 2 1 0.0801 8.0 2945995 2.0 21.0 1.0 15.0 40.0 +183 2 1 0.1001 10.0 3682494 2.0 27.0 8.0 17.0 38.0 +184 2 1 0.1201 12.0 4418992 1.27 29.0 0 22.0 23.0 +185 2 2 0.1328 13.27 4886669 2.0 190.0 14.0 146.0 14.0 +186 2 2 0.1528 15.27 5237572 2.0 14.0 3.0 9.0 14.0 +187 2 2 0.1728 17.27 5588475 2.0 7.0 1.0 6.0 16.0 +188 2 2 0.1928 19.27 5939379 2.0 3.0 0 3.0 17.0 +189 2 2 0.2128 21.27 6290282 2.0 4.0 0 4.0 20.0 +190 2 2 0.2328 23.27 6641185 2.0 3.0 1.0 1.0 16.0 +191 2 2 0.2528 25.27 6992088 2.0 0 0 0 15.0 +192 2 2 0.2728 27.27 7342992 2.0 4.0 2.0 2.0 12.0 +193 2 2 0.2928 29.27 7693895 2.0 5.0 1.0 3.0 3.0 +194 2 2 0.3128 31.27 8044798 2.0 6.0 0 5.0 7.0 +195 2 2 0.3328 33.27 8395701 2.0 9.0 2.0 5.0 8.0 +196 2 2 0.3528 35.27 8746605 2.0 5.0 3.0 2.0 22.0 +197 2 2 0.3728 37.27 9097508 2.0 5.0 3.0 2.0 12.0 +198 2 3 0.3928 39.27 9448411 2.0 29.0 12.0 11.0 23.0 +199 2 3 0.4128 41.27 10019747 2.0 7.0 4.0 2.0 35.0 +200 2 3 0.4328 43.27 10591083 2.0 2.0 2.0 0 16.0 +201 2 3 0.4528 45.27 11162419 2.0 3.0 1.0 0 23.0 +202 2 3 0.4728 47.27 11733754 2.0 5.0 3.0 1.0 29.0 +203 2 3 0.4928 49.27 12305090 2.0 3.0 0 2.0 17.0 +204 2 3 0.5128 51.27 12876426 2.0 0 0 0 22.0 +205 2 3 0.5328 53.27 13447762 2.0 1.0 1.0 0 16.0 +206 2 3 0.5528 55.27 14019098 2.0 1.0 1.0 0 20.0 +207 2 3 0.5728 57.27 14590434 2.0 0 0 0 22.0 +208 2 3 0.5928 59.27 15161770 2.0 4.0 1.0 2.0 6.0 +209 2 3 0.6128 61.27 15733105 2.0 4.0 1.0 3.0 21.0 +210 2 3 0.6328 63.27 16304441 1.63 1.0 0 1.0 16.0 +211 2 4 0.6491 64.9 16770080 2.0 16.0 9.0 5.0 42.0 +212 2 4 0.6691 66.9 18307449 2.0 10.0 5.0 3.0 32.0 +213 2 4 0.6891 68.9 19844817 2.0 8.0 5.0 2.0 33.0 +214 2 4 0.7091 70.9 21382186 2.0 6.0 5.0 0 41.0 +215 2 4 0.7291 72.9 22919555 2.0 5.0 4.0 0 37.0 +216 2 4 0.7491 74.9 24456924 2.0 9.0 8.0 1.0 27.0 +217 2 4 0.7691 76.9 25994292 2.0 8.0 4.0 1.0 47.0 +218 2 4 0.7891 78.9 27531661 2.0 12.0 5.0 6.0 41.0 +219 2 4 0.8091 80.9 29069030 1.14 10.0 4.0 5.0 19.0 +220 2 5 0.8205 82.04 29945330 2.0 37.0 14.0 17.0 56.0 +221 2 5 0.8405 84.04 32580963 2.0 10.0 6.0 1.0 37.0 +222 2 5 0.8605 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