view integrate_15/integrate7_15nodes.xml @ 0:2f2c7fd180e1 draft

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<tool id="integrate7_15nodes" name="Integrates eQTL results" version="7.0.0">
	<description> after 15 parallel runs</description>
	<command interpreter="python">
	    integrate7_15nodes.py --input1 $input1 --input2 $input2 --input3 $input3 --input4 $input4 --input5 $input5 --input6 $input6 --input7 $input7 --input8 $input8 --input9 $input9 --input10 $input10 --input11 $input11 --input12 $input12 --input13 $input13 --input14 $input14 --input15 $input15 --output1 $output1
        </command>
        <inputs>
            <param label="eQTL results file 1" name="input1" type="data" format="tabular" help="A tabular with eQTL results 1"></param>
	    <param label="eQTL results file 2" name="input2" type="data" format="tabular" help="A tabular with eQTL results 2"></param>
            <param label="eQTL results file 3" name="input3" type="data" format="tabular" help="A tabular with eQTL results 3"></param>
	    <param label="eQTL results file 4" name="input4" type="data" format="tabular" help="A tabular with eQTL results 4"></param>
            <param label="eQTL results file 5" name="input5" type="data" format="tabular" help="A tabular with eQTL results 5"></param>
            <param label="eQTL results file 6" name="input6" type="data" format="tabular" help="A tabular with eQTL results 6"></param>
	    <param label="eQTL results file 7" name="input7" type="data" format="tabular" help="A tabular with eQTL results 7"></param>
            <param label="eQTL results file 8" name="input8" type="data" format="tabular" help="A tabular with eQTL results 8"></param>
	    <param label="eQTL results file 9" name="input9" type="data" format="tabular" help="A tabular with eQTL results 9"></param>
            <param label="eQTL results file 10" name="input10" type="data" format="tabular" help="A tabular with eQTL results 10"></param>
            <param label="eQTL results file 11" name="input11" type="data" format="tabular" help="A tabular with eQTL results 11"></param>
	    <param label="eQTL results file 12" name="input12" type="data" format="tabular" help="A tabular with eQTL results 12"></param>
            <param label="eQTL results file 13" name="input13" type="data" format="tabular" help="A tabular with eQTL results 13"></param>
	    <param label="eQTL results file 14" name="input14" type="data" format="tabular" help="A tabular with eQTL results 14"></param>
            <param label="eQTL results file 15" name="input15" type="data" format="tabular" help="A tabular with eQTL results 15"></param>
        </inputs>
	<outputs>
                <data format="tabular" name="output1" />
	</outputs>
	<requirements>
	</requirements>
	<tests>
          <test>
          </test>
	</tests>
	<help>
		
**What it does**

Concatenates eQTL result files after parallel runs on the cluster.


**Example output file**

eQTL results file, each row correspond to an eQTL (21 columns; only a part of the file is shown)::

 trait_name	trait_number	eQTL_number	chr	peak_marker	peak_position	peak_LR	peak_LOD	R2	TR2	S	additive 	dominance	LOD1_L_m	LOD1_L_pos	LOD1_R_m	LOD1_R_pos	LOD2_L_m	LOD2_L_pos	LOD2_R_m	LOD2_R_pos
 geneA		4		2		3	15		79.31		14.576	3.162992	0.1093	0.1915	5.2649	-0.0602		0		12		0.6318		15		0.8678		11		0.5984		15		0.8941
 geneB		5		1		6	7		54.41		12.0029	2.6046293	0.0833	0.1621	5.0323	0.0516		0		6		0.4803		7		0.6296		5		0.4237		7		0.6509
 geneC		6		1		1	12		81.5		13.2053	2.8655501	0.082	0.2517	154.622	-0.0513		0		11		0.7835		12		0.815		10		0.6549		12		0.815
 geneC		6		2		5	6		33.92		12.4418	2.6998706	0.0881	0.2653	161.127	0.0546		0		4		0.2652		6		0.4058		2		0.1031		7		0.4629
 geneF		11		1		9	4		11.74		14.4418	3.1338706	0.0937	0.252	72.2489	-0.0562		0		1		0.0014		4		0.1995		1		0.0001		4		0.2035
 geneH		12		2		1	9		43.66		16.9545	3.6791265	0.092	0.3558	0.1466	0.0544		0		8		0.4159		9		0.5408		5		0.3295		9		0.5987
 geneJ		13		1		7	11		66.41		15.6251	3.3906467	0.0965	0.2625	8.2335	-0.0558		0		9		0.5515		11		0.7408		9		0.5464		12		0.7631

        </help>
</tool>