annotate search-operations.xml @ 2:88e1bd76b069 draft

planemo upload commit 91b079b5648caa7a8795ec0957a4b11e104d986e

<tool id="monarch-search-operations" name="Search Operations" version="0.1.0">
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="frontmatter" />
	<command><![CDATA[
curl --silent -X GET --header 'Accept: application/json' 'https://api.monarchinitiative.org/api/search/entity/$input?rows=$rows&fetch_objects=true' > $output
	]]></command>
	<inputs>
		<param  name="input" type="text" format="txt" multiple="false" label="Search Term (e.g. shh, parkinson, femur)" />
		<param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
	</inputs>
	<expand macro="outputs" />
	<tests>
		<test>
			<param name="input" value="ssh"/>
			<output name="output" file="ssh-search-term.json"/>
		</test>
		<test>
			<param name="input" value="parkinson"/>
			<output name="output" file="parkinson-search-term.json"/>
		</test>
		<test>
			<param name="input" value="femur"/>
			<output name="output" file="femur-search-term.json"/>
		</test>
	</tests>
	<expand macro="citations" />
</tool>