Mercurial > repos > nathandunn > biolinkmonarchinitiative
annotate README.md @ 5:6eaaeedf2f37 draft default tip
planemo upload commit 469f80a2162a7284b6299615caf6aee64bb34167
author | nathandunn |
---|---|
date | Mon, 04 Dec 2017 21:50:52 -0500 |
parents | 49b46f044d48 |
children |
rev | line source |
---|---|
0
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
1 # Biolink-Monarch |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
2 |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
3 [![Build Status](https://travis-ci.org/nathandunn/biolink-monarch.svg?branch=master)](https://travis-ci.org/nathandunn/biolink-monarch) |
1
8fdad43e4250
planemo upload commit 2e06360e9b6f5ca9e6d254430878008fa6a57a03
nathandunn
parents:
0
diff
changeset
|
4 [![DOI](https://zenodo.org/badge/94568425.svg)](https://zenodo.org/badge/latestdoi/94568425) |
8fdad43e4250
planemo upload commit 2e06360e9b6f5ca9e6d254430878008fa6a57a03
nathandunn
parents:
0
diff
changeset
|
5 |
0
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
6 |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
7 Wrapper around the [Monarch Iniatitive Biolink API](https://api.monarchinitiative.org/api/). |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
8 |
1
8fdad43e4250
planemo upload commit 2e06360e9b6f5ca9e6d254430878008fa6a57a03
nathandunn
parents:
0
diff
changeset
|
9 Available on the [Galaxy Toolshed](https://toolshed.g2.bx.psu.edu/repository?repository_id=c46e72ccdb506940). |
8fdad43e4250
planemo upload commit 2e06360e9b6f5ca9e6d254430878008fa6a57a03
nathandunn
parents:
0
diff
changeset
|
10 |
0
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
11 The [Monarch Intiative](https://monarchinitiative.org/) is a warehouse that integrates, aligns, and re-distributes cross-species gene, genotype, variant, disease, and phenotype data using ontology associations. |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
12 |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
13 The [Biolink API](https://github.com/biolink/biolink-api) is an open API biologically and biomedically relevant entities, and the relationships between them. |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
14 |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
15 |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
16 |
4
49b46f044d48
planemo upload commit 0dbcda86caba8f8fead7cb6fde0ae3e73d398f1e
nathandunn
parents:
1
diff
changeset
|
17 ![Screen Shot](images/ScreenShot2.png) |
0
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
18 |
4f6fba8332ec
planemo upload commit 570b5e3caa1a2bd2d9937fb6acc3ea991bfeaa10-dirty
nathandunn
parents:
diff
changeset
|
19 |
4
49b46f044d48
planemo upload commit 0dbcda86caba8f8fead7cb6fde0ae3e73d398f1e
nathandunn
parents:
1
diff
changeset
|
20 Upload new tool. |
49b46f044d48
planemo upload commit 0dbcda86caba8f8fead7cb6fde0ae3e73d398f1e
nathandunn
parents:
1
diff
changeset
|
21 |
49b46f044d48
planemo upload commit 0dbcda86caba8f8fead7cb6fde0ae3e73d398f1e
nathandunn
parents:
1
diff
changeset
|
22 planemo shed_upload --shed_target toolshed |