Mercurial > repos > nathandunn > biolinkmonarchinitiative

comparison test-data/bioentityset-overrepresentation.tsv @ 4:49b46f044d48 draft

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planemo upload commit 0dbcda86caba8f8fead7cb6fde0ae3e73d398f1e
author nathandunn
date Mon, 04 Dec 2017 19:35:12 -0500
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3:d40860663861 4:49b46f044d48
1 p n p_uncorrected c
2 6.830958069760975e-17 Peripheral retinal degeneration 2.2250677751664415e-19 HP:0007769
3 6.830958069760975e-17 Hypoplasia of the retina 2.2250677751664415e-19 HP:0007770
4 7.89829526810427e-17 Retinal hole 2.572734615017678e-19 HP:0011530
5 7.89829526810427e-17 Progressive cone degeneration 2.572734615017678e-19 HP:0008020
6 7.89829526810427e-17 Progressive night blindness 2.572734615017678e-19 HP:0007675
7 7.89829526810427e-17 Subretinal exudate 2.572734615017678e-19 HP:0011532
8 1.0494238468181382e-16 Progressive retinal degeneration 3.418318719277323e-19 HP:0007893
9 1.206054271707303e-16 Abnormal dark-adapted bright flash electroretinogram 3.928515543020531e-19 HP:0030470
10 1.206054271707303e-16 Severe sensorineural hearing impairment 3.928515543020531e-19 HP:0008625
11 1.206054271707303e-16 Severe hearing impairment 3.928515543020531e-19 HP:0012714
12 1.206054271707303e-16 Electronegative electroretinogram 3.928515543020531e-19 HP:0007984
13 1.206054271707303e-16 Age-related macular degeneration 3.928515543020531e-19 HP:0007868
14 1.206054271707303e-16 Abnormal dark-adapted electroretinogram 3.928515543020531e-19 HP:0030469
15 1.206054271707303e-16 Abnormal amplitude of dark-adapted bright flash electroretinogram 3.928515543020531e-19 HP:0030478
16 1.206054271707303e-16 Exudative retinopathy 3.928515543020531e-19 HP:0007898
17 1.5839101496752315e-16 Abetalipoproteinemia 5.159316448453523e-19 HP:0008181
18 2.0651383842794574e-16 Mottled pigmentation 6.726835127946115e-19 HP:0001070
19 2.0651383842794574e-16 Decreased light- and dark-adapted electroretinogram amplitude 6.726835127946115e-19 HP:0000654
20 2.0651383842794574e-16 Tapetoretinal degeneration 6.726835127946115e-19 HP:0000547
21 3.0355215014437025e-16 Vitreoretinal degeneration 9.887692187113037e-19 HP:0000655
22 3.440257701614546e-16 Abnormal light- and dark-adapted electroretinogram 1.1206051145324254e-18 HP:0008323
23 4.398497628785198e-16 Chorioretinal atrophy 1.4327353839691198e-18 HP:0000533
24 5.5905604395766495e-16 Chorioretinal degeneration 1.8210294591454885e-18 HP:0200065
25 5.5905604395766495e-16 Pigmentary retinal degeneration 1.8210294591454885e-18 HP:0001146
26 6.289380494506863e-16 Decreased circulating low-density lipoprotein levels 2.0486581415331802e-18 HP:0003563
27 6.289380494506863e-16 Abnormal full-field electroretinogram 2.0486581415331802e-18 HP:0030466
28 8.882660716055608e-16 Macular dystrophy 2.893374826076745e-18 HP:0007754
29 1.382679693118587e-15 Hypopigmentation of the fundus 4.503842648594746e-18 HP:0007894
30 1.9031265438999284e-15 Undetectable electroretinogram 6.1991092635176825e-18 HP:0000550
31 2.1122613289451027e-15 Cystoid macular edema 6.880330061710433e-18 HP:0011505
32 2.3418549516569064e-15 Macular edema 7.628192024941062e-18 HP:0040049
33 2.593667312051605e-15 Hypolipoproteinemia 8.44842772655246e-18 HP:0010981
34 2.593667312051605e-15 Retinal exudate 8.44842772655246e-18 HP:0001147
35 2.593667312051605e-15 Acanthocytosis 8.44842772655246e-18 HP:0001927
36 2.8695893665276034e-15 Macular thickening 9.347196633640402e-18 HP:0030498
37 3.1716514051110723e-15 Aplasia/Hypoplasia of the retina 1.0331112068765708e-17 HP:0008061
38 3.50203175980966e-15 Congenital blindness 1.1407269575927232e-17 HP:0007875
39 3.50203175980966e-15 Progressive sensorineural hearing impairment 1.1407269575927232e-17 HP:0000408
40 4.25725636613049e-15 Keratoconus 1.3867284580229608e-17 HP:0000563
41 4.25725636613049e-15 Increased corneal curvature 1.3867284580229608e-17 HP:0100692
42 4.6872822616738014e-15 Decreased corneal thickness 1.52680203963316e-17 HP:0100689
43 5.6665065757932175e-15 Congenital sensorineural hearing impairment 1.8457676142648916e-17 HP:0008527
44 6.22204643614839e-15 Constriction of peripheral visual field 2.0267252235011042e-17 HP:0001133
45 6.22204643614839e-15 Abnormality of corneal thickness 2.0267252235011042e-17 HP:0011486
46 6.826128614391264e-15 Retinal perforation 2.2234946626681643e-17 HP:0011958
47 9.806380222363747e-15 Yellow/white lesions of the retina 3.194260658750406e-17 HP:0030506
48 1.0714378391101258e-14 Abnormality of the level of lipoprotein cholesterol 3.49002553456067e-17 HP:0010979
49 1.1697348885694248e-14 Macular degeneration 3.810211363418322e-17 HP:0000608
50 1.2760744238882322e-14 Hyperinsulinemia 4.156594214619649e-17 HP:0000842
51 1.3910360837022003e-14 Cone/cone-rod dystrophy 4.531062161896418e-17 HP:0000548
52 1.5152357340328436e-14 Abnormal circulating insulin level 4.9356212834946045e-17 HP:0040215
53 1.5152357340328436e-14 Abnormal insulin level 4.9356212834946045e-17 HP:0040214
54 1.9500056883908283e-14 Progressive hearing impairment 6.351810059904978e-17 HP:0001730
55 2.4939874038128746e-14 Nephronophthisis 8.123737471703174e-17 HP:0000090
56 2.7035661772422384e-14 Atypical scarring of skin 8.80640448613107e-17 HP:0000987
57 4.008932828040028e-14 Retinal atrophy 1.3058413120651556e-16 HP:0001105
58 1.5770726338521152e-13 Abnormality of the renal medulla 5.137044409941743e-16 HP:0100957
59 5.259073285790678e-13 Chorioretinal abnormality 1.7130531875539669e-15 HP:0000532
60 6.659349463318531e-13 Poikilocytosis 2.1691692062926814e-15 HP:0004447
61 6.659349463318531e-13 Nyctalopia 2.1691692062926814e-15 HP:0000662
62 7.058112904256892e-13 Progressive visual loss 2.299059577933841e-15 HP:0000529
63 7.478238672358695e-13 Type II diabetes mellitus 2.4359083623318224e-15 HP:0005978
64 1.050722902848435e-12 Abnormality of the choroid 3.4225501721447396e-15 HP:0000610
65 1.050722902848435e-12 Abnormal electroretinogram 3.4225501721447396e-15 HP:0000512
66 1.050722902848435e-12 Abnormality of the retinal vasculature 3.4225501721447396e-15 HP:0008046
67 1.1738758145094465e-12 Aplasia/Hypoplasia affecting the fundus 3.823699721529142e-15 HP:0008057
68 1.2401964820000423e-12 Retinoblastoma 4.039727954397532e-15 HP:0009919
69 1.2401964820000423e-12 Retinal neoplasm 4.039727954397532e-15 HP:0012777
70 1.8071448747244773e-12 Rod-cone dystrophy 5.8864653899820104e-15 HP:0000510
71 2.4683037784772113e-12 Neurodegeneration 8.040077454323164e-15 HP:0002180
72 4.478830903968583e-12 Visual field defect 1.4589025745826002e-14 HP:0001123
73 6.241419062480174e-12 Photophobia 2.0330355252378417e-14 HP:0000613
74 8.224646178578066e-12 Neoplasm of the eye 2.679037843185038e-14 HP:0100012
75 9.414914677027705e-12 Abnormal visual electrophysiology 3.0667474518005555e-14 HP:0030453
76 1.1746775963207132e-11 Abnormality of cholesterol metabolism 3.8263113886668185e-14 HP:0003107
77 1.1746775963207132e-11 Retinal degeneration 3.8263113886668185e-14 HP:0000546
78 1.2271185604454866e-11 Abnormality of the curvature of the cornea 3.99712886138595e-14 HP:0100691
79 1.2816571631169346e-11 Gliosis 4.174779032954184e-14 HP:0002171
80 1.588495014454129e-11 Conductive hearing impairment 5.174250861414101e-14 HP:0000405
81 1.588495014454129e-11 Abnormal macular morphology 5.174250861414101e-14 HP:0001103
82 1.802887603054271e-11 Blindness 5.872598055551371e-14 HP:0000618
83 2.5076918624406142e-11 Functional abnormality of the middle ear 8.168377402086691e-14 HP:0011452
84 3.732511675833473e-11 Ophthalmoplegia 1.2158018488056917e-13 HP:0000602
85 4.192831051586348e-11 Embryonal neoplasm 1.3657430135460415e-13 HP:0002898
86 7.091426267827702e-11 Retinopathy 2.3099108364259617e-13 HP:0000488
87 7.355048062205055e-11 Ophthalmoparesis 2.3957811277540893e-13 HP:0000597
88 8.810257081441287e-11 Pigmentary retinopathy 2.869790580274035e-13 HP:0000580
89 8.810257081441287e-11 Polydactyly 2.869790580274035e-13 HP:0010442
90 1.388190595549975e-10 Abnormality of the vasculature of the eye 4.5217934708468243e-13 HP:0008047
91 1.388190595549975e-10 Microphthalmia 4.5217934708468243e-13 HP:0000568
92 1.700756278473561e-10 Upper limb undergrowth 5.539922731184238e-13 HP:0009824
93 2.075293589422645e-10 Retinal dystrophy 6.759913972060733e-13 HP:0000556
94 2.3646302288247017e-10 Abnormality of globe size 7.702378595520201e-13 HP:0100887
95 5.981776395427826e-10 Abnormality of the glial cells 1.9484613665888684e-12 HP:0100705
96 6.727486481875538e-10 Hypogonadism 2.1913636748780254e-12 HP:0000135
97 6.926524543477764e-10 Abnormality of circulating hormone level 2.2561969196995973e-12 HP:0003117
98 7.776774899705444e-10 Hypoplasia of penis 2.5331514331288093e-12 HP:0008736
99 8.474892365194142e-10 Neuroepithelial neoplasm 2.760551259020893e-12 HP:0030063
100 9.228914326532511e-10 Nervous tissue neoplasm 3.0061610184144985e-12 HP:0030060
101 9.228914326532511e-10 Neuroectodermal neoplasm 3.0061610184144985e-12 HP:0030061
102 1.1543718428324624e-09 Glaucoma 3.760168869161115e-12 HP:0000501
103 1.2198554340554865e-09 Wide nasal bridge 3.973470469236112e-12 HP:0000431
104 1.3984366259310385e-09 Visual loss 4.555168162641819e-12 HP:0000572
105 1.6879988822761898e-09 Abnormality of lipid metabolism 5.498367694710716e-12 HP:0003119
106 1.7334975044422942e-09 Metrorrhagia 5.646571675707799e-12 HP:0100608
107 1.9779810642388804e-09 Scarring 6.4429350626673635e-12 HP:0100699
108 2.0304474054716845e-09 Abnormality of retinal pigmentation 6.613835196976171e-12 HP:0007703
109 2.628331383770522e-09 Limb undergrowth 8.561340012281831e-12 HP:0009826
110 3.7316154453488525e-09 Obesity 1.2155099170517434e-11 HP:0001513
111 3.919340997996726e-09 Hypoplastic male external genitalia 1.2766583055363929e-11 HP:0000050
112 6.321359545900789e-09 Abnormality of the middle ear 2.0590747706517226e-11 HP:0000370
113 7.098972376183352e-09 Anteverted nares 2.3123688521769875e-11 HP:0000463
114 7.433390275858353e-09 External genital hypoplasia 2.4212997641232422e-11 HP:0003241
115 7.433390275858353e-09 Aplasia/Hypoplasia affecting the eye 2.4212997641232422e-11 HP:0008056
116 8.145089250918333e-09 Increased body weight 2.6531235345010855e-11 HP:0004324
117 9.75530240286726e-09 Abnormality of the nares 3.1776229325300524e-11 HP:0005288
118 1.6103309897109546e-08 Optic atrophy 5.2453778166480606e-11 HP:0000648
119 1.9060793562044177e-08 Diabetes mellitus 6.208727544639797e-11 HP:0000819
120 2.987920944013083e-08 Abnormality of the nasal alae 9.732641511443266e-11 HP:0000429
121 5.248020807817572e-08 Amyotrophic lateral sclerosis 1.7094530318624013e-10 HP:0007354
122 5.658236502116998e-08 Abnormality of the menstrual cycle 1.8430737791912046e-10 HP:0000140
123 5.984595800281632e-08 Motor neuron atrophy 1.9493797395054177e-10 HP:0007373
124 6.327799953364802e-08 Menstrual irregularities 2.0611726232458636e-10 HP:0000858
125 7.198491237736304e-08 Abnormal motor neuron morphology 2.3447854194580793e-10 HP:0002450
126 7.466319549291483e-08 Abnormal neuron morphology 2.4320259118213297e-10 HP:0012757
127 7.884897789335068e-08 Abnormality of the optic disc 2.568370615418589e-10 HP:0012795
128 1.228397756115146e-07 Aplasia/hypoplasia involving bones of the upper limbs 4.0012956225249056e-10 HP:0006496
129 1.483975077425636e-07 Hyperreflexia 4.833795040474385e-10 HP:0001347
130 1.5352755857272025e-07 Abnormality of the uvea 5.00089767337851e-10 HP:0000553
131 1.5352755857272025e-07 Abnormality of the penis 5.00089767337851e-10 HP:0000036
132 1.6426921240078137e-07 Neoplasm by histology 5.350788677549882e-10 HP:0011792
133 2.25119429172574e-07 Abnormality of reproductive system physiology 7.332880429074072e-10 HP:0000080
134 3.0555431964818125e-07 Abnormality of the cornea 9.952909434794178e-10 HP:0000481
135 3.2038455159280755e-07 Visual impairment 1.0435978879244546e-09 HP:0000505
136 3.9242331225647995e-07 Aplasia/hypoplasia involving bones of the extremities 1.278251831454332e-09 HP:0045060
137 4.1098926074512013e-07 Peripheral neuropathy 1.3387272336974598e-09 HP:0009830
138 4.238018850191182e-07 Cataract 1.3804621661860528e-09 HP:0000518
139 4.78725935631177e-07 Abnormality of the optic nerve 1.5593678685054627e-09 HP:0000587
140 4.78725935631177e-07 Abnormality of skin pigmentation 1.5593678685054627e-09 HP:0001000
141 5.319518140608289e-07 Sensorineural hearing impairment 1.7327420653447194e-09 HP:0000407
142 5.563495931254543e-07 Abnormality of the external nose 1.812213658389102e-09 HP:0010938
143 5.647031906221201e-07 Abnormality of the lens 1.8394240736876876e-09 HP:0000517
144 5.904457001011749e-07 Aplasia/hypoplasia of the extremities 1.923275896095032e-09 HP:0009815
145 7.464471377270939e-07 Abnormal glucose homeostasis 2.4314239013911853e-09 HP:0011014
146 8.375817156963961e-07 Edema 2.7282792042227886e-09 HP:0000969
147 9.123756391914161e-07 Abnormality of the nasal bridge 2.9719076195160134e-09 HP:0000422
148 1.0652736599597843e-06 Abnormal nasal morphology 3.469946775113304e-09 HP:0005105
149 1.4816609184875052e-06 Functional abnormality of the inner ear 4.826257063477215e-09 HP:0011389
150 1.5018195704310955e-06 Localized skin lesion 4.891920424856989e-09 HP:0011355
151 1.8844948396305382e-06 Abnormality of the inner ear 6.1384196730636424e-09 HP:0000359
152 1.9348465481391357e-06 Abnormality of carbohydrate metabolism/homeostasis 6.302431752896208e-09 HP:0011013
153 2.066065317689044e-06 Puberty and gonadal disorders 6.729854455013172e-09 HP:0008373
154 2.1767481626287405e-06 Abnormality of female internal genitalia 7.0903848945561585e-09 HP:0000008
155 2.3225926077022225e-06 Abnormality of fluid regulation 7.565448233557727e-09 HP:0011032
156 2.5743067328521833e-06 Abnormality of the testis 8.385363950658578e-09 HP:0000035
157 2.7438357503096225e-06 Nystagmus 8.937575733907565e-09 HP:0000639
158 3.1924265166540625e-06 Abnormal involuntary eye movements 1.039878344186991e-08 HP:0012547
159 3.941055199038619e-06 Abnormal internal genitalia 1.2837313351917324e-08 HP:0000812
160 4.3982513901891805e-06 Abnormality of erythrocytes 1.4326551759573878e-08 HP:0001877
161 4.729009605111635e-06 Abnormality of the female genitalia 1.5403940081796854e-08 HP:0010460
162 9.081642576385783e-06 Ataxia 2.958189764295043e-08 HP:0001251
163 9.499843448701236e-06 Abnormal retinal morphology 3.09441154680822e-08 HP:0000479
164 1.4273095112661205e-05 Abnormal renal morphology 4.649216649075311e-08 HP:0012210
165 1.458387749487557e-05 Abnormality of male external genitalia 4.750448695399209e-08 HP:0000032
166 1.5888839675674068e-05 Abnormality of coordination 5.17551780966582e-08 HP:0011443
167 1.729796819095009e-05 Atrophy/Degeneration affecting the central nervous system 5.6345173260423745e-08 HP:0007367
168 1.7854728108751475e-05 Abnormal external genitalia 5.8158723481275166e-08 HP:0000811
169 2.2456195406528198e-05 Abnormality of vision 7.314721630790944e-08 HP:0000504
170 2.5135309938722395e-05 Abnormal peripheral nervous system morphology 8.187397374176675e-08 HP:0000759
171 3.23236138618761e-05 Abnormality of the male genitalia 1.0528864450122508e-07 HP:0010461
172 3.2971690409923215e-05 Aplasia/hypoplasia involving the skeleton 1.0739964302906584e-07 HP:0009115
173 3.464335079920156e-05 Abnormality of digit 1.1284479087687803e-07 HP:0011297
174 6.881496226463522e-05 Short stature 2.2415297154604308e-07 HP:0004322
175 7.611517703089195e-05 Muscle weakness 2.479321727390617e-07 HP:0001324
176 8.259858594747801e-05 Abnormality of the anterior segment of the globe 2.690507685585603e-07 HP:0004328
177 0.0001138007728773714 Upper motor neuron dysfunction 3.7068655660381564e-07 HP:0002493
178 0.00011888491829110587 Neoplasm by anatomical site 3.8724729085050773e-07 HP:0011793
179 0.00012097516293517722 Abnormality of the fundus 3.9405590532631017e-07 HP:0001098
180 0.00012417258265780599 Abnormality of the posterior segment of the globe 4.044709532827557e-07 HP:0004329
181 0.00015262060533597588 Hearing impairment 4.971355222670225e-07 HP:0000365
182 0.00016059211883394877 Neoplasm 5.231013642799634e-07 HP:0002664
183 0.00017325315786960351 Abnormality of the cerebellum 5.643425337772102e-07 HP:0001317
184 0.00017618587241738414 Abnormality of the metencephalon 5.738953498937594e-07 HP:0011283
185 0.00017618587241738414 Abnormality of hindbrain morphology 5.738953498937594e-07 HP:0011282
186 0.00017916319029463729 Hearing abnormality 5.835934537284602e-07 HP:0000364
187 0.00018218571347576067 Abnormality of body height 5.934388061099696e-07 HP:0000002
188 0.00022960204326684703 Abnormality of the kidney 7.478893917486874e-07 HP:0000077
189 0.0002391515950095283 Abnormality of limb bone morphology 7.789954234838055e-07 HP:0002813
190 0.00024905713587446506 Abnormal reproductive system morphology 8.112610289070523e-07 HP:0012243
191 0.00025312164937551113 Abnormality of eye movement 8.245004865651829e-07 HP:0000496
192 0.0002699835132109949 Abnormality of the upper urinary tract 8.794251244657815e-07 HP:0010935
193 0.0002721607996075025 Abnormality of the endocrine system 8.865172625651547e-07 HP:0000818
194 0.000350750188320614 Abnormality of the nose 1.142508756744671e-06 HP:0000366
195 0.0006114146839577272 Abnormality of connective tissue 1.9915787751066032e-06 HP:0003549
196 0.0006205299480287158 Abnormality of the genital system 2.0212701890186184e-06 HP:0000078
197 0.0008069550626492879 Abnormality of the upper limb 2.628518119378788e-06 HP:0002817
198 0.0008921120254797562 Abnormality of limb bone 2.905902363126242e-06 HP:0040068
199 0.0009992733379070886 Abnormality of the orbital region 3.254962012726673e-06 HP:0000315
200 0.001310620639930439 Intellectual disability 4.269122605636609e-06 HP:0001249
201 0.0013287166742452364 Global developmental delay 4.32806734281836e-06 HP:0001263
202 0.001393837501355185 Seizures 4.540187300831222e-06 HP:0001250
203 0.00144209606825589 Abnormal appendicular skeleton morphology 4.697381329823746e-06 HP:0011844
204 0.0015535980630793837 Behavioral abnormality 5.060580010030566e-06 HP:0000708
205 0.0015853247689068327 Abnormality of the vasculature 5.163924328686751e-06 HP:0002597
206 0.0016953367076601303 Abnormality of body weight 5.522269406059057e-06 HP:0004323
207 0.001848609048286737 Abnormality of blood and blood-forming tissues 6.021527844582205e-06 HP:0001871
208 0.0020950978592187467 Growth delay 6.8244229941978716e-06 HP:0001510
209 0.0030266555423608833 Bone spicule pigmentation of the retina 9.858812841566396e-06 HP:0007737
210 0.004174007346542459 Abnormality of the urinary system 1.3596115135317457e-05 HP:0000079
211 0.005126939374012541 Abnormality of central motor function 1.6700128254112513e-05 HP:0011442
212 0.00540995350440465 Neurodevelopmental delay 1.76219983856829e-05 HP:0012758
213 0.00608983167308619 Abnormality of skin morphology 1.9836585254352408e-05 HP:0011121
214 0.006688071979710432 Abnormality of the ear 2.178525074824245e-05 HP:0000598
215 0.012588335067972373 Abnormality of limbs 4.100434875561034e-05 HP:0040064
216 0.013734914174553314 Abnormality of the skin 4.473913411906617e-05 HP:0000951
217 0.024146525032660786 Abnormal eye physiology 7.86531760021524e-05 HP:0012373
218 0.03252935640175157 Abnormality of the globe 0.00010595881564088459 HP:0012374
219 0.03334787037817537 Abnormal eye morphology 0.00010862498494519663 HP:0012372
220 0.034524935406332564 Abnormality of the genitourinary system 0.00011245907298479663 HP:0000119
221 0.039139246044852014 Undetectable light- and dark-adapted electroretinogram 0.00012748940079756357 HP:0007688
222 0.039139246044852014 Peripheral visual field loss 0.00012748940079756357 HP:0007994
223 0.043868013802690724 Neurodevelopmental abnormality 0.0001428925531032271 HP:0012759
224 0.04946207981041838 Abnormality of muscle physiology 0.0001611142664834475 HP:0011804