comparison test-data/genes-for-disease.json @ 3:d40860663861 draft

planemo upload commit 1a35e82b210719d58263c618f9a67801db26d391
author nathandunn
date Sat, 02 Dec 2017 16:41:34 -0500
parents 4f6fba8332ec
children
comparison
equal deleted inserted replaced
2:88e1bd76b069 3:d40860663861
1 {"associations": [{"subject_extension": null, "slim": null, "publications": null, "object": {"xrefs": null, "taxon": {"label": null, "id": null}, "types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": "Parkinson Disease 4, Autosomal Dominant", "deprecated": null, "id": "OMIM:605543", "description": null, "consider": null}, "id": "d5e54aab-71b0-4786-b9b9-043eb5ce3a3f", "type": null, "evidence_graph": {"nodes": [{"lbl": "some variant of SNCA that causes Parkinson disease 4", "id": ":.well-known/genid/OMIM163890-605543VL"}, {"lbl": "SNCA, TRIPLICATION", "id": "ClinVarVariant:14009"}, {"lbl": "SNCA", "id": "NCBIGene:6622"}, {"lbl": null, "id": "MONARCH:ca2ccb6f8073a02a12d146f8ae37e70610490aea"}, {"lbl": "some variant of K04528 alpha-synuclein | (RefSeq) SNCA", "id": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL"}, {"lbl": "some variant of SNCA that is marker/mechanism for Parkinson Disease 4, Autosomal Dominant Lewy Body", "id": ":.well-known/genid/NCBIGene6622-OMIM605543VL"}, {"lbl": null, "id": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344"}, {"lbl": "Parkinson Disease 4, Autosomal Dominant", "id": "OMIM:605543"}, {"lbl": "sequencing assay evidence", "id": "ECO:0000220"}, {"lbl": null, "id": "MONARCH:108fe573789d09cf97f794ce0ad299a1365514f7"}], "edges": [{"sub": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": "MONARCH:108fe573789d09cf97f794ce0ad299a1365514f7", "pred": "OBAN:association_has_object", "obj": "OMIM:605543"}, {"sub": "ClinVarVariant:14009", "pred": "GENO:0000840", "obj": "OMIM:605543"}, {"sub": "MONARCH:ca2ccb6f8073a02a12d146f8ae37e70610490aea", "pred": "OBAN:association_has_object", "obj": "OMIM:605543"}, {"sub": ":.well-known/genid/OMIM163890-605543VL", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344", "pred": "OBAN:association_has_object", "obj": "OMIM:605543"}, {"sub": "ClinVarVariant:14009", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "pred": "GENO:0000418", "obj": "NCBIGene:6622"}, {"sub": "MONARCH:ca2ccb6f8073a02a12d146f8ae37e70610490aea", "pred": "OBAN:association_has_subject", "obj": ":.well-known/genid/NCBIGene6622-OMIM605543VL"}, {"sub": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344", "pred": "RO:0002558", "obj": "ECO:0000220"}, {"sub": ":.well-known/genid/OMIM163890-605543VL", "pred": "RO:0002200", "obj": "OMIM:605543"}, {"sub": "MONARCH:108fe573789d09cf97f794ce0ad299a1365514f7", "pred": "OBAN:association_has_subject", "obj": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL"}, {"sub": "MONARCH:01da44a6602c4f7dfd58e38fac3007f6d8b13344", "pred": "OBAN:association_has_subject", "obj": ":.well-known/genid/OMIM163890-605543VL"}, {"sub": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "pred": "RO:0002607", "obj": "OMIM:605543"}, {"sub": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "pred": "RO:0002607", "obj": "OMIM:605543"}]}, "subject": {"xrefs": null, "taxon": {"label": "Homo sapiens", "id": "NCBITaxon:9606"}, "types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": "SNCA", "deprecated": null, "id": "NCBIGene:6622", "description": null, "consider": null}, "provided_by": ["https://data.monarchinitiative.org/ttl/kegg.ttl", "https://data.monarchinitiative.org/ttl/ctd.ttl", "https://data.monarchinitiative.org/ttl/omim.ttl", "http://data.monarchinitiative.org/ttl/clinvar.ttl"], "relation": {"types": null, "categories": null, "replaced_by": null, "synonyms": null, "label": null, "deprecated": null, "id": null, "description": null, "consider": null}, "qualifiers": null, "object_extension": null, "evidence_types": null}], "compact_associations": null, "objects": ["NCBIGene:6622"], "start": null, "numFound": null, "facet_pivot": null, "facet_counts": {"subject_taxon_label": {"Homo sapiens": 1}, "object_closure": {"DOID:14330": 1, "BFO:0000020": 1, "MESH:D009422": 1, "DOID:0050890": 1, "DOID:863": 1, "BFO:0000002": 1, "MESH:D001927": 1, "DOID:0060895": 1, "DOID:480": 1, "BFO:0000016": 1, "DOID:0060892": 1, "MESH:D004194": 1, "DOID:4": 1, "DOID:679": 1, "MESH:D019636": 1, "DOID:7": 1, "MESH:D001480": 1, "MESH:D002493": 1, "BFO:0000001": 1, "DOID:1289": 1, "BFO:0000017": 1, "DOID:936": 1, "MESH:D009069": 1, "MESH:D010300": 1, "DOID:331": 1}}} 1 {"compact_associations": null, "associations": [{"evidence_types": null, "slim": null, "provided_by": ["https://data.monarchinitiative.org/ttl/kegg.ttl", "https://data.monarchinitiative.org/ttl/omim.ttl", "https://data.monarchinitiative.org/ttl/ctd.ttl", "https://data.monarchinitiative.org/ttl/clinvar.ttl"], "evidence_graph": {"edges": [{"pred": "GENO:0000418", "sub": ":.well-known/genid/OMIM163890-605543VL", "obj": "NCBIGene:6622"}, {"pred": "OBAN:association_has_subject", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "ClinVarVariant:14009"}, {"pred": "OBAN:association_has_object", "sub": "MONARCH:01da44a6602c4f7d", "obj": "OMIM:605543"}, {"pred": "dc:source", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "PMID:15159488"}, {"pred": "RO:0002200", "sub": ":.well-known/genid/OMIM163890-605543VL", "obj": "OMIM:605543"}, {"pred": "OBAN:association_has_subject", "sub": "MONARCH:01da44a6602c4f7d", "obj": ":.well-known/genid/OMIM163890-605543VL"}, {"pred": "RO:0002558", "sub": "MONARCH:01da44a6602c4f7d", "obj": "ECO:0000220"}, {"pred": "GENO:0000418", "sub": "ClinVarVariant:14009", "obj": "NCBIGene:6622"}, {"pred": "RO:0002607", "sub": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "obj": "OMIM:605543"}, {"pred": "OBAN:association_has_object", "sub": "MONARCH:ca2ccb6f8073a02a", "obj": "OMIM:605543"}, {"pred": "OBAN:association_has_object", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "OMIM:605543"}, {"pred": "GENO:0000418", "sub": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "obj": "NCBIGene:6622"}, {"pred": "GENO:0000418", "sub": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "obj": "NCBIGene:6622"}, {"pred": "dc:source", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "PMID:14593171"}, {"pred": "dc:source", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "PMID:14755720"}, {"pred": "dc:source", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "PMID:8285594"}, {"pred": "GENO:0000840", "sub": "ClinVarVariant:14009", "obj": "OMIM:605543"}, {"pred": "dc:source", "sub": "MONARCH:b9fb7e7142ff205b", "obj": "PMID:17251522"}, {"pred": "RO:0002607", "sub": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "obj": "OMIM:605543"}, {"pred": "OBAN:association_has_subject", "sub": "MONARCH:108fe573789d09cf", "obj": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL"}, {"pred": "OBAN:association_has_object", "sub": "MONARCH:108fe573789d09cf", "obj": "OMIM:605543"}, {"pred": "OBAN:association_has_subject", "sub": "MONARCH:ca2ccb6f8073a02a", "obj": ":.well-known/genid/NCBIGene6622-OMIM605543VL"}], "nodes": [{"id": ":.well-known/genid/OMIM163890-605543VL", "lbl": "some variant of SNCA that causes Parkinson disease 4"}, {"id": ":.well-known/genid/KEGG-hsa6622-OMIM605543VL", "lbl": "some variant of K04528 alpha-synuclein | (RefSeq) SNCA"}, {"id": "MONARCH:108fe573789d09cf", "lbl": null}, {"id": "PMID:8285594", "lbl": null}, {"id": "PMID:17251522", "lbl": null}, {"id": "ECO:0000220", "lbl": "sequencing assay evidence"}, {"id": "ClinVarVariant:14009", "lbl": "SNCA, TRIPLICATION"}, {"id": ":.well-known/genid/NCBIGene6622-OMIM605543VL", "lbl": "some variant of SNCA that is marker/mechanism for Parkinson Disease 4, Autosomal Dominant Lewy Body"}, {"id": "MONARCH:01da44a6602c4f7d", "lbl": null}, {"id": "PMID:14755720", "lbl": null}, {"id": "MONARCH:ca2ccb6f8073a02a", "lbl": null}, {"id": "NCBIGene:6622", "lbl": "SNCA"}, {"id": "OMIM:605543", "lbl": "Parkinson Disease 4, Autosomal Dominant"}, {"id": "MONARCH:b9fb7e7142ff205b", "lbl": null}, {"id": "PMID:14593171", "lbl": null}, {"id": "PMID:15159488", "lbl": null}]}, "relation": {"deprecated": null, "id": "GENO:0000840", "replaced_by": null, "consider": null, "label": "pathogenic_for_condition", "categories": null, "synonyms": null, "description": null, "types": null}, "publications": [{"deprecated": null, "id": "PMID:17251522", "replaced_by": null, "consider": null, "label": null, "categories": null, "synonyms": null, "description": null, "types": null}, {"deprecated": null, "id": "PMID:15159488", "replaced_by": null, "consider": null, "label": null, "categories": null, "synonyms": null, "description": null, "types": null}, {"deprecated": null, "id": "PMID:14593171", "replaced_by": null, "consider": null, "label": null, "categories": null, "synonyms": null, "description": null, "types": null}, {"deprecated": null, "id": "PMID:14755720", "replaced_by": null, "consider": null, "label": null, "categories": null, "synonyms": null, "description": null, "types": null}, {"deprecated": null, "id": "PMID:8285594", "replaced_by": null, "consider": null, "label": null, "categories": null, "synonyms": null, "description": null, "types": null}], "type": null, "subject_extension": null, "object": {"taxon": {"id": null, "label": null}, "xrefs": null, "deprecated": null, "id": "OMIM:605543", "replaced_by": null, "consider": null, "label": "Parkinson Disease 4, Autosomal Dominant", "categories": null, "synonyms": null, "description": null, "types": null}, "id": "c539ed41-5c67-4e66-9ec6-99c09f974c71", "object_extension": null, "subject": {"taxon": {"id": "NCBITaxon:9606", "label": "Homo sapiens"}, "xrefs": null, "deprecated": null, "id": "NCBIGene:6622", "replaced_by": null, "consider": null, "label": "SNCA", "categories": null, "synonyms": null, "description": null, "types": null}, "negated": false, "qualifiers": null}], "objects": ["NCBIGene:6622"], "numFound": null, "start": null, "facet_counts": {"object_closure": {"DOID:679": 1, "MESH:D009069": 1, "DOID:936": 1, "DOID:0050890": 1, "BFO:0000016": 1, "BFO:0000002": 1, "DOID:14330": 1, "MESH:D010300": 1, "DOID:863": 1, "DOID:0060895": 1, "BFO:0000017": 1, "DOID:7": 1, "DOID:480": 1, "DOID:4": 1, "DOID:1289": 1, "BFO:0000020": 1, "MESH:D001480": 1, "MESH:D004194": 1, "BFO:0000001": 1, "DOID:0060892": 1, "MESH:D001927": 1, "DOID:331": 1, "MESH:D009422": 1, "MESH:D002493": 1, "MESH:D019636": 1}, "subject_taxon_label": {"Homo sapiens": 1}}, "facet_pivot": null}