Mercurial > repos > nathandunn > biolinkmonarchinitiative
comparison bioentityset-overrepresentation.xml @ 5:6eaaeedf2f37 draft default tip
planemo upload commit 469f80a2162a7284b6299615caf6aee64bb34167
| author | nathandunn |
|---|---|
| date | Mon, 04 Dec 2017 21:50:52 -0500 |
| parents | 49b46f044d48 |
| children |
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| 4:49b46f044d48 | 5:6eaaeedf2f37 |
|---|---|
| 1 <tool id="monarch-bioentityset-overrepresentation" name="Bioentity Set Get Over Representation" version="0.1.0"> | 1 <tool id="monarch-bioentityset-overrepresentation" name="Bioentity Set Get Over Representation" version="0.1.0"> |
| 2 <macros> | 2 <macros> |
| 3 <import>macros.xml</import> | 3 <import>macros.xml</import> |
| 4 </macros> | 4 </macros> |
| 5 <requirements> | |
| 6 <requirement type="package" version="1.5">jq</requirement> | |
| 7 </requirements> | |
| 5 <expand macro="frontmatter" /> | 8 <expand macro="frontmatter" /> |
| 6 <command><![CDATA[ | 9 <command><![CDATA[ |
| 7 #* | 10 #* |
| 8 curl --silent -X GET --header 'Accept: application/json' 'https://api-dev.monarchinitiative.org/api/bioentityset/overrepresentation/?object_category=phenotype&subject=NCBIGene%3A6295&subject=NCBIGene%3A1258&subject=NCBIGene%3A3614&subject=NCBIGene%3A26121&subject=NCBIGene%3A7275&subject=NCBIGene%3A55857&subject=NCBIGene%3A79797&subject=NCBIGene%3A10594&subject=NCBIGene%3A64218&subject=NCBIGene%3A7401&ontology=hp&subject_category=gene&taxon=NCBITaxon%3A9606&object_category=phenotype&max_p_value=0.05' > $output | 11 curl --silent -X GET --header 'Accept: application/json' 'https://api-dev.monarchinitiative.org/api/bioentityset/overrepresentation/?object_category=phenotype&subject=NCBIGene%3A6295&subject=NCBIGene%3A1258&subject=NCBIGene%3A3614&subject=NCBIGene%3A26121&subject=NCBIGene%3A7275&subject=NCBIGene%3A55857&subject=NCBIGene%3A79797&subject=NCBIGene%3A10594&subject=NCBIGene%3A64218&subject=NCBIGene%3A7401&ontology=hp&subject_category=gene&taxon=NCBITaxon%3A9606&object_category=phenotype&max_p_value=0.05' > $output |
| 9 *# | 12 *# |
| 45 <outputs> | 48 <outputs> |
| 46 <data name="output_json" format="json"/> | 49 <data name="output_json" format="json"/> |
| 47 <data | 50 <data |
| 48 name="output_tsv" | 51 name="output_tsv" |
| 49 format="tsv" | 52 format="tsv" |
| 50 header_row="1" | |
| 51 > | 53 > |
| 52 </data> | 54 </data> |
| 53 </outputs> | 55 </outputs> |
| 54 <tests> | 56 <tests> |
| 55 <!-- | 57 <!-- |