view phenotype-gene-associations.xml @ 3:d40860663861 draft

planemo upload commit 1a35e82b210719d58263c618f9a67801db26d391

<tool id="monarch-phenotype-gene-associations" name="Phenotype Gene Associations" version="0.1.0">
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="frontmatter" />
	<command><![CDATA[
curl --silent -X GET --header 'Accept: application/json' 'https://api.monarchinitiative.org/api/bioentity/phenotype/$input/gene/$taxid/ids?rows=$rows&fetch_objects=true' > $output
	]]></command>
	<inputs>
		<param  name="input" type="text" format="txt" multiple="false" label="Phenotype ID (e.g. MP:0001569)" />
		<param  name="taxid" type="text" format="txt" multiple="false" label="Taxon ID (e.g. NCBITaxon:10090)" />
		<param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
	</inputs>
	<expand macro="outputs" />
	<tests>
		<test>
			<param name="input" value="MP:0001569"/>
			<param name="taxid" value="NCBITaxon:10090"/>
			<output name="output" file="phenotype-for-phenotype-and-taxon.json"/>
		</test>
	</tests>
	<expand macro="citations" />
</tool>