annotate get-object.xml @ 0:028a3ffc17b4 draft

planemo upload commit b095175f34e78ceded24a6e1da99b328f50db86d

<tool id="planteome-get-object" name="Get Object" version="0.1.0">
	<macros>
		<import>macros.xml</import>
	</macros>
	<expand macro="frontmatter" />
	<command><![CDATA[
curl --silent -X GET --header 'Accept: application/json' 'http://biolink.planteome.org/apiapi/bioentity/$type$input$associations?rows=$rows&fetch_objects=true' > $output
	]]></command>
	<inputs>
		<param  name="input" type="text" format="txt" multiple="false" label="Object ID" />
		<param  name="type" type="select" multiple="false" display="radio" label="Type">
			<option value="">Any</option>
			<option value="gene/">Gene (e.g. NCBIGene:84570)</option>
			<option value="genotype/">Genotype (e.g. ZFIN:ZDB-FISH-150901-6607)</option>
		</param>
		<param  name="associations" type="select" multiple="false" display="radio" label="Render Associations">
			<option value="/associations/">True</option>
			<option value="" checked="true">False</option>
		</param>
		<param name="rows" type="text" format="txt" multiple="false" value="1000" label="Num Rows"/>
	</inputs>
	<expand macro="outputs" />
	<tests>
		<test>
			<param name="input" value="OMIM:605543"/>
			<param name="type" value=""/>
			<output name="output" file="bioentity-object-for-disease.json"/>
		</test>
		<test>
			<param name="input" value="OMIM:605543"/>
			<param name="type" value=""/>
			<param name="associations" value="/associations/"/>
			<output name="output" file="bioentity-associations-for-disease.json"/>
		</test>
		<test>
			<param name="input" value="NCBIGene:84570"/>
			<param name="association" value="gene/"/>
			<output name="output" file="bioentity-object-for-gene.json"/>
		</test>
		<test>
			<param name="input" value="ZFIN:ZDB-FISH-150901-6607"/>
			<param name="association" value="genotype/"/>
			<output name="output" file="bioentity-object-for-genotype.json"/>
		</test>
	</tests>
	<expand macro="citations" />
</tool>